Query= MSMg01no048_p21.b1 MSMg01no048_p21.b1 CHROMAT_FILE:
MSMg01no048_p21.b1 PHD_FILE: MSMg01no048_p21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:10:31 2005
(679 letters)
>mm_chr4_76396309_76397387
Length = 1079
Score = 1266 bits (655), Expect = 0.0
Identities = 673/679 (99%)
Strand = Plus / Plus
Query: 1 tatgcttgttcttgagaatttttatatcaggtttcactggtatatccgatttcactgtaa 60
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 201 tatgcttgttcttgagaatttttatatcaggtttcactggtatatcagatttcactgtaa 260
Query: 61 tatcagattacactgttgcagcactctacaaaccaaacaaagataatgatgtgattttag 120
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 261 tatcagattacactgttgcagcactctacaaaacaaacaaagataatgatgtgattttag 320
Query: 121 ggtaaaaagtccttaaaggaatcttcagttttcttcttcctctttacttggttaatccta 180
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 321 ggtaaaaagtccttaaaggaatcttcagttttcttcttcctctttacttgtttaatccta 380
Query: 181 agtgatgtcagtcagttgtatctaatagctgtgagtgggtagctggagctactgtgctca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agtgatgtcagtcagttgtatctaatagctgtgagtgggtagctggagctactgtgctca 440
Query: 241 gttccagattatagtattgattaattgattgtctcttctagttgtgaatcgtattagtgt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gttccagattatagtattgattaattgattgtctcttctagttgtgaatcgtattagtgt 500
Query: 301 tggctcaggcagcttggcttagagccaatgcctaattgtcaatgggaggcaagaggcagc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tggctcaggcagcttggcttagagccaatgcctaattgtcaatgggaggcaagaggcagc 560
Query: 361 ttttctatttcactgctgtatttagatgggtattcagagaacaaaatgcattctaaagat 420
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 561 ttttctatttcactgctgtatttagatgggtattcagagaacaaaaagcattctaaagat 620
Query: 421 gatgtgacagaagagaatgtaataaatctaataaatatgcagttactgattgatctaacg 480
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 621 gatgtgacagaagagaatgtaataaatctaataaatatgcagttactgattgatttaacg 680
Query: 481 aacaacaactagtgggaagaaatctcaggaatttgtcatttctcaatgacagatttccaa 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aacaacaactagtgggaagaaatctcaggaatttgtcatttctcaatgacagatttccaa 740
Query: 541 aacagtttaaaaataatcaggtgtacgaagagaaggaagtgatatggtttaggattttga 600
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 aacagtttaaaaacaatcaggtgtacgaagagaaggaagtgatatggtttaggattttga 800
Query: 601 atgataatgagcccacatcagagttatagaattagttcattaaggacacagatgttatga 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 atgataatgagcccacatcagagttatagaattagttcattaaggacacagatgttatga 860
Query: 661 ctgtcagtattttccagat 679
|||||||||||||||||||
Sbjct: 861 ctgtcagtattttccagat 879
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 679
Length of database: 1079
Length adjustment: 10
Effective length of query: 669
Effective length of database: 1069
Effective search space: 715161
Effective search space used: 715161
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no048_p21.g1 MSMg01no048_p21.g1 CHROMAT_FILE:
MSMg01no048_p21.g1 PHD_FILE: MSMg01no048_p21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:10:31 2005
(750 letters)
>mm_chr4_76439005_76440154
Length = 1150
Score = 1247 bits (645), Expect = 0.0
Identities = 711/733 (96%), Gaps = 5/733 (0%)
Strand = Plus / Minus
Query: 1 tcgtggctccagggtgcttgtgatgcttactgaagtgg-catggccactggccacgtggc 59
||||||||||||||||||||||||||||||||||| || |||||||||||| ||||||||
Sbjct: 731 tcgtggctccagggtgcttgtgatgcttactgaagcggccatggccactggtcacgtggc 672
Query: 60 cctgaagtttccgggttttgctcaggacggtgcccgaaaggaaacaggatgaaaaatatt 119
|| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 671 cccgaagtttccgggttttgctcaggacggtggccgaaaggaaacaggatgaaaaatatt 612
Query: 120 tttgataaaaaacaaattaaaaaaaaagtttcatgtgaatataaataagtgaggcacact 179
|||||||||||||||||| ||||||||||||| || ||| ||||||||||||| ||||||
Sbjct: 611 tttgataaaaaacaaatttaaaaaaaagtttcttgagaacataaataagtgagtcacact 552
Query: 180 gagacataagacatcagagaaagcatgattcttactttatctaaggtttaaattcacttc 239
|||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 gagatataagacgtcagagaaagcatgattcttactttatctaaggtttaaattcacttc 492
Query: 240 agcttagggaatttaagcatagccctaattcctgagacacatatgtggactgttagcagg 299
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 agcttagggaatttaagcatagccctaattcctgagacacatatgtggactgttagcaga 432
Query: 300 cagttttccaaaacaccaaaggattacgttctgcctctcttttaagaatactttctctt- 358
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 431 cagttttccaaaacaccaaaggattacgttctgcctctc-tttaagaatactttctctta 373
Query: 359 taaaaaaaaatcacttgtttattttcttggagttcctattactgtgataaggcttcatga 418
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 aaaaaaaaaatcacttgtttattttcttggagttcctattactgtgataaggcttcatga 313
Query: 419 ctgaaaaggaaaaaaaaattaaaagatttattttgattatccttccaccatggaaggaag 478
||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 312 ctgaaaagg-aaaaaaaattaaaagatttattttgattatccttccaccatggaaagaag 254
Query: 479 tgaagacaggaacctggaggcaggagctggtattaaaagctcactggctgcactgtctgt 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 tgaagacaggaacctggaggcaggagctggtattaaaagctcactggctgcactgtctgt 194
Query: 539 tttgctcagtctactttcttatacactctgggaccacaggcctagtggagacatccacaa 598
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 193 tttgctcagtctactttcttataaactctgggaccacaggcctagtggagacatccacaa 134
Query: 599 t-gggagttgggttctcctacatcaatcgagaaaatgcaccacaggcttgtgcacacatc 657
| | |||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 133 tagtgagttgggttctcctacatcaatcgagaaaatgcaccacaggcttgtgcacagatc 74
Query: 658 agtctggtggggacattctcccttttgaagttctacatatgtcaagttgtactaaaaatg 717
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73 agtctggtggggacattctcccttttgaagttctacatatgtcaagttgtactaaaaatg 14
Query: 718 ggcaacatattta 730
|||||||||||||
Sbjct: 13 ggcaacatattta 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 750
Length of database: 1150
Length adjustment: 10
Effective length of query: 740
Effective length of database: 1140
Effective search space: 843600
Effective search space used: 843600
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
|
