BAC Information

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BAC

Clone NameMSMg01-049C06
Chromosome4 (Build37)
Map Location 75,071,465 - 75,072,114
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040258, LOC100039814, LOC636847, 3110001D03Rik, LOC623529, LOC100039833
Downstream geneLOC100039884, LOC667845, Ptprd
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-049C06.T7 (MSMg01no049_c06.b1)MSMg01-049C06.TJ (MSMg01no049_c06.g1)
ACCAG278704AG278705
length1,2061,216
length of high quality
(start - end)		658 (51 - 708)736 (75 - 810)
definitionCHROMAT_FILE: MSMg01no049_c06.b1 PHD_FILE: MSMg01no049_c06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:10:50 2005CHROMAT_FILE: MSMg01no049_c06.g1 PHD_FILE: MSMg01no049_c06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:10:50 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTTTATTTNNNNNNACATTGCGCGCTAXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCTCTTATTGTTCATATTTTCACCTCTCATGAAGGATGATTA
TGTGTGTGTGTGTGTGTGCGTTGTGTGACGTTATAAACATGTTTATGTGT
GTTCTAGCACTGTATCTGTCCACATCATTTACCAAGCAAGTTATAAAAAA
AGAAACTACAAATATACCTAACATTCTAAATCTTTTCCTTTAAGTACTTC
TTGTATATGTTGTGGAAGGCAGCCTTAGCTGTATGCCTACATAAGATTCC
ACTGGAAGACAATACTGTAGTTTATTTTGTCTGTGGCTATTCATCATTTG
TATTCAGTGTGCTGTTAAGTGTATGTGATTACAAGAGGATGAATGTAGGC
AGTATGTGAGAAAAACAATAGCATCAGTGTTGGCTTAAACATATCTAAAT
TGGATTCCTTCTTTAAGAATTTATCAATGTCTGTAATATGTTTAATCTCT
CAAACACATTTGGCACATTTGGTAAAATTGTTCCAAAATGATTTGTGTGG
CAAACACCATTTAGGAGACACTCTTTTTAAGGAAAACTTTCACTTTAATT
GTGATTACCACTTTGCAACAAGCTTTGACTTTTATAAGTCGCAAAAACTC
CTTCTTATGCTATTATTCCTGAAAGTTAAAAGATACATTCTGACAATAAA
TAGTTACCCAGTTACCACAGCTATTTTGCGTGTGACTGTTTTCTCTGTAT
TATATTATTCCCTAATTACTCTCTTCTTATATTTACTTTATCTTTTTCTC
ATTTTTTAACCATATACACTTTTTAATTCATTTTCTACTTATTTATCTAA
TAACTATAACTACTTTTTTATCAATTATCTTATTTATTACTATATATTTA
TATTTCATATAATACCTTTTATATTAAAATTTATTAAATACTATTCATTC
CAATTTTACCATTATTTTTTTTACTATATTTATATTCTCTAATTTCTTTC
TAATTTTTCCTCACTTAAACCTTCATTTATCATTTATTTTTTTCAACCCT
ATATATATAAAATTTATTATTTCTTCTTTTCTTTTTCTCTTCATCTTTTC
ATTATATTTTATTATTTTTATTCAATATTTCTATTTATCTATCTTTTATT
TTACTTAATTTTTCTAATATTAATCTCTACTAAACTATATTTCATAATAT
TCTTTC

GGGGGNTATGATGTGAGGCTGGGGXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTTTGTTTAGCTCTATACCCCATTTTT
ATTAGGGTTATTTGGTTTTCAGAAATATAATTTCTAGAGTTCTTTTTATA
TATTGAATATTAGTCCTCTATCAGATTTAGGATTGGTAAAGATATTTTCC
AAATCTGTTGGATGCCTTTTTGTCTTATTAACAGTGTTGTGTTCCTTGCA
GAAGCTTTGTGATTTTATGAGGTCCTATTTGTTAATTCTTTTTTTTCCCT
AGATAATTTCTTCATTTACATTTCAAACGCTAGGCTGAAAGTCCCCTATA
CCCTCCCTCTGCCCTGTTCCCAAACCCACCCACTCCCACTTCCTGGCCAT
GGTATTCACCTGTACTGGGGCGTATAGTCTTCACAATACCAAGGCCCTAT
CCTCCCATTGATGGCCTACTAGGCCATCCTCTGCTACATATTCAACTAGA
GACACAAGCTCTAAGGGGTACTGATTAGTTCATATTGTTGTTACTCCTAT
AGGGTTGCAGACCCCTTTAGCTTCTTGGGTACTTTCTCTTGCTCCTTCAT
TGGAGGCCCTGTATTCCATCCAATAGATGACTGTGAGCATCCACTTCTGT
ATTTGCCAGTCACTGGCATAGCCTCACAAGAGACAGCTATATCAGGGATA
AGGCATTGGTGTTGTGTTCAGCAATTTTTCCCCTATGCCCATATGTTCAA
GGTTCTTCCCCATTTTCCCCTCTATAAGTTTCAGTGTCTCTGGTTTTATG
TGGAGGTCCTTGATCCACTTAGATTTGAGCTTTGTAAAGGAAATATAATG
GGTTGATTAGCATTCTTCTACATGCTAACTGCCCGTTTAGCCAGCACCAT
TTGTTGAAAATGCTGTCTTTCTTCCCCTGAAGGTTTAACTCCTTTGTCAA
GGTCAAGGGACCCCAGGGGTTTGGTTTCATTTCTGGGTCTTTCATTCTAT
TCCATTGGTTCTACCTGTCCGTCCCTGATACAGTACCTTGGCAGGGATTA
TTTTTTTGTTTTCGTTTTCTGCTGAATTGTTGAATTTTCTTTTACAAAAA
TTTTTGATTTCTTTTCTATTAGCCTTATTTTTATTCCTCTTCTCAACTAT
CTTTATTTATATAATTAATTATATTTAAACTAATCGATTTTTCATCTTAC
TTCATAAATTGTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no049_c06.b1 MSMg01no049_c06.b1 CHROMAT_FILE:
MSMg01no049_c06.b1 PHD_FILE: MSMg01no049_c06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:10:50 2005
         (658 letters)



>mm_chr4_75071188_75072247
          Length = 1060

 Score = 1176 bits (608), Expect = 0.0
 Identities = 641/656 (97%), Gaps = 8/656 (1%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctcttattgttcatattttcacctctcatgaaggatgattatgtgtgtgtgtgtg 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 927 gaattctcttattgttcatattttcacctctcatgaaggatgattatgtgtgtgtgtgt- 869

                                                                       
Query: 65  tgtgcgttgtgtgacgttataaacatgtttatgtgtgttctagcactgtatctgtccaca 124
                |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 868 -----gttgtgtgacgttataaacatgtttatgtgtgttctagcactgtatctgtccaca 814

                                                                       
Query: 125 tcatttaccaagcaagttataaaaaaagaaactacaaatatacctaacattctaaatctt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 813 tcatttaccaagcaagttataaaaaaagaaactacaaatatacctaacattctaaatctt 754

                                                                       
Query: 185 ttcctttaagtacttcttgtatatgttgtggaaggcagccttagctgtatgcctacataa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 753 ttcctttaagtacttcttgtatatgttgtggaaggcagccttagctgtatgcctacataa 694

                                                                       
Query: 245 gattccactggaagacaatactgtagtttattttgtctgtggctattcatcatttgtatt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 693 gattccactggaagacaatactgtagtttattttgtctgtggctattcatcatttgtatt 634

                                                                       
Query: 305 cagtgtgctgttaagtgtatgtgattacaagaggatgaatgtaggcagtatgtgagaaaa 364
           |||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||
Sbjct: 633 cagtgtgctgttaagtgtatgtgattacaagaggatgaatgtaggtggtatgtgagaaaa 574

                                                                       
Query: 365 acaatagcatcagtgttggcttaaacatatctaaattggattccttctttaagaatttat 424
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 573 acaatagcatcagtgttggcttaaacatatttaaattggattccttctttaagaatttat 514

                                                                       
Query: 425 caatgtctgtaatatgtttaatctctcaaacacatttggcacatttggtaaaattgttcc 484
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 caatgtctgtaatatatttaatctctcaaacacatttggcacatttggtaaaattgttcc 454

                                                                       
Query: 485 aaaatgatttgtgtggcaaacaccatttaggagacactctttttaaggaaaactttcact 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 aaaatgatttgtgtggcaaacaccatttaggagacactctttttaaggaaaactttcact 394

                                                                       
Query: 545 ttaattgtgattaccactttgcaacaagctttgacttttataagtcgcaaaaac--tcct 602
           ||||||||||||||||||||||||||||||||||||||||||||| |||||||   | ||
Sbjct: 393 ttaattgtgattaccactttgcaacaagctttgacttttataagtagcaaaaaaaattct 334

                                                                   
Query: 603 tcttatgctattattcctgaaagttaaaagatacattctgacaataaatagttacc 658
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 tcttatgctattattcctgaaagttaaaagatacattctgacaataaatagttacc 278


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 658
Length of database: 1060
Length adjustment: 10
Effective length of query: 648
Effective length of database: 1050
Effective search space:   680400
Effective search space used:   680400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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