BAC Information

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BAC

Clone NameMSMg01-049C22
Chromosome4 (Build37)
Map Location 5,055,755 - 5,056,274
singlet/doubletsinglet
Overlap genenone
Upstream genePenk1, A830012C17Rik, LOC100039297, LOC622019, Impad1, LOC100039338
Downstream gene1700012H17Rik, LOC669309
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-049C22.T7 (MSMg01no049_c22.b1)MSMg01-049C22.TJ (MSMg01no049_c22.g1)
ACCAG278733AG278734
length1,1781,247
length of high quality
(start - end)		---524 (67 - 590)
definitionCHROMAT_FILE: MSMg01no049_c22.b1 PHD_FILE: MSMg01no049_c22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:10:55 2005CHROMAT_FILE: MSMg01no049_c22.g1 PHD_FILE: MSMg01no049_c22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:10:56 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTTTTTGCATTGGGCGCTAXXXXXXXXXXXXXXXXXXXXXXXCGCGGXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTTTTATTCACATTTTAGCGTGATATACAGATT
GATGCATTTCTTTTGATGCAATAGGCCGAATTTGTGCCATATCATGTCTG
TGACCTGATATGAACCATTAATGACACTGTGCCTGACAAGTACCATGACT
CCAGCCTTTGTACGGACTGAGTTACTCTTCCTGTTGGCCAGTCATTCTGT
CCAGTCAATGTTTGTGCACATAACTTTCATTATTAGAACATTTTCTACTT
ACTTCTACTAACAGTTCGTTCGGCGCATGGCAAAAATCTTATTGACTATC
TAGATATGACGTCTTGATGATTGACTTGCAATTTTCCCTATGGGTCTCAC
ATATATCGAACCTTACCCGAGTTTCGTTCTCCTCCACGGCCGATCTGACA
TTCCTGATGAAAGTAACCACCAGTTTAGGTTACTGATCTAAATATGTGCA
GACTAACCTTGAAGAATTTATGAAATTAAATGGTGATCTTTCTTAATGAA
ACCTCCTTTTAAATGGAAAATATCCTCCCCCTAATTCAGGCCTTGATTCT
CTTAATTTTTTAACAATTATGTAATGAACCCGGAACCCTTGTTTGACTTT
TCTTTAATTTATCCCACCCTGTATGTCCTCCTAATGAAAATATTTGTTAT
GATATCCTTTCCTCCTTTGCCGGGGTTTTAAATTTTATTTCTGCTTTCTA
TATCTTTACTTTTATATAACTTCTTTATTTTTTAACTTCTCTTTTATTAT
CTTCCCTTTNTATATATTATTTTCCACTTTTCTATACTTCTCTTTTTCTT
CTTCTTCTTTTTCTTTCCCTCATTCTAC

TTTTACCAGTGTAGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXCTCTGTTCTTTCTGCTTTCCGTGACCTTGTAAAT
TGATAACACAGTGCTCCTTACATGGAAGACTGTGCCCTGTACAAAGAGAT
CATTTGCATTACAGGGCCTTAAGAAGACTACTATCCTTGATGGAAGAATA
GAGATGACTAGCTCAGGCAGTGAGCCCTATAGTATTCTCTATCTAAGGAC
AAGGAGGGGTAACACTGGGTGAGAGAACACTAACAAAGATTACCAGAAAT
TGTATATTGTCTGCTTGTCCCCAATCAGAGACCCAAACAAACAGTAGTGG
GCCATATGAACACATAATAGAGCACATGAGGACATGATGGGGTCCTTATG
AGATGCTAGAGCCCAGTACAAGGTAATCACTTGAATTTTGTTGGAATCAG
TTATTTGTTGAATTGCATTGGTACAAAGCATTGCTAGAGGATAGAAAGGG
GGAGTGACACTTTCCAATTTATTTGTAATTAGAAAATAATTTGGGTCCAA
GAGCGACCTGTGCACCATGGGAGGGGGTCTGTTTTGCATCACAAATAGAC
CGCATCTTGGATTGACTGAGTGGACTTGATGCTTATGAAGCCTGCTTGCA
AGCCAGGCTACTGAATACACAGCTATTTGGTACATCCTTTATGAGCCTAG
TTGAGGAATTTTCATCTGTACCTTATGTAGTTTCTCTTAATTTCCAGCCT
TGGTTTCTAATACTTTTCTTTCCTTTCTACATTATTTCTTTCCCCTTATT
TTTGTGAATAATCAGTTCTTCTTTTTTCTGATTCTTTACTTCCCTCTCTA
TTCTTTTTTATTCTTTTTATTTTTTTCTACTACTACTTTCTTATCTTCTA
TTTTTTCCCTCCCTTCTTATTTTTTTTTATTTTTGTACTCACTTTTCTTC
TCTTTTATTCCTCATCCTCATAATTCTTTCTACTTATTCTTTTTTCTCTC
TACTCCTCTTCATTAAATCTTTTTTTTTTTCTTTCTTACATCTTCTTGTA
TTCTCTTTCAAGTATTATCCTTCTTCCTTTAGCTCGCTTGTTCTCCTTTC
TTTATCTCTTTCCTCATCCTCACTTCACTCCTCATTCTTTTTTCATTTTC
CTTTCTCATACTATATTATATCTCCCTATCTTTGTCTATTCTCTCCTATC
TTCCTTCTCTAATCACTACCTTTCCTTTCCTCCTCTTATTCGCATCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no049_c22.g1 MSMg01no049_c22.g1 CHROMAT_FILE:
MSMg01no049_c22.g1 PHD_FILE: MSMg01no049_c22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:10:56 2005
         (524 letters)



>mm_chr4_5055551_5056474
          Length = 924

 Score =  982 bits (508), Expect = 0.0
 Identities = 517/520 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gttctttctgctttccgtgaccttgtaaattgataacacagtgctccttacatggaagac 64
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 205 gttctttctgctttccgtgaccttgtaaattgataacacagtgctccttacatgaaagac 264

                                                                       
Query: 65  tgtgccctgtacaaagagatcatttgcattacagggccttaagaagactactatccttga 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tgtgccctgtacaaagagatcatttgcattacagggccttaagaagactactatccttga 324

                                                                       
Query: 125 tggaagaatagagatgactagctcaggcagtgagccctatagtattctctatctaaggac 184
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 325 tggaagaatagagatgactagctcaggcactgagccctatagtattctctatctaaggac 384

                                                                       
Query: 185 aaggaggggtaacactgggtgagagaacactaacaaagattaccagaaattgtatattgt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aaggaggggtaacactgggtgagagaacactaacaaagattaccagaaattgtatattgt 444

                                                                       
Query: 245 ctgcttgtccccaatcagagacccaaacaaacagtagtgggccatatgaacacataatag 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ctgcttgtccccaatcagagacccaaacaaacagtagtgggccatatgaacacataatag 504

                                                                       
Query: 305 agcacatgaggacatgatggggtccttatgagatgctagagcccagtacaaggtaatcac 364
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 agcacatgaggacttgatggggtccttatgagatgctagagcccagtacaaggtaatcac 564

                                                                       
Query: 365 ttgaattttgttggaatcagttatttgttgaattgcattggtacaaagcattgctagagg 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ttgaattttgttggaatcagttatttgttgaattgcattggtacaaagcattgctagagg 624

                                                                       
Query: 425 atagaaagggggagtgacactttccaatttatttgtaattagaaaataatttgggtccaa 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 atagaaagggggagtgacactttccaatttatttgtaattagaaaataatttgggtccaa 684

                                                   
Query: 485 gagcgacctgtgcaccatgggagggggtctgttttgcatc 524
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 gagcgacctgtgcaccatgggagggggtctgttttgcatc 724


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 524
Length of database: 924
Length adjustment: 10
Effective length of query: 514
Effective length of database: 914
Effective search space:   469796
Effective search space used:   469796
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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