Query= MSMg01no049_e18.b1 MSMg01no049_e18.b1 CHROMAT_FILE:
MSMg01no049_e18.b1 PHD_FILE: MSMg01no049_e18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:11:09 2005
(812 letters)
>mm_chr4_111475448_111476659
Length = 1212
Score = 1508 bits (780), Expect = 0.0
Identities = 801/808 (99%)
Strand = Plus / Plus
Query: 5 gaattcttattttagtgaaggtgctgttttctttttacccattttaaaaaatatatccag 64
|||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct: 205 gaattcttattttagtgaaggtgctgttttctttttacccatttaaaaaaataaatccag 264
Query: 65 aaaatcccatgccataaaatggtttcaattttgagtataagtatttcagaagcgtatttt 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aaaatcccatgccataaaatggtttcaattttgagtataagtatttcagaagcgtatttt 324
Query: 125 taagtataaatattaatattataactccagatttgttttacactttacattgttactaaa 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 taagtataaatattaatattataactccagatttgttttacactttacattgttactaaa 384
Query: 185 ataaggcttgaaaattagcatacctaattaaaaaaggaattgatacccttttaaatcatg 244
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ataaggcttgaatattagcatacctaattaaaaaaggaattgatacccttttaaatcatg 444
Query: 245 cgcaagttgttttcattgtgaatcatattaaaacttctgaggcaagcatttcttatacca 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 cgcaagttgttttcattgtgaatcatattaaaacttctgaggcaagcatttcttatacca 504
Query: 305 tagcacagactagtggacctattcatagtgtctttggggaggctctagaattgcacattt 364
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tagcacagactagtggacctaatcatagtgtctttggggaggctctagaattgcacattt 564
Query: 365 gcatctcatatttacacaatggtcttcatgtactgaaataattgttctgccaatccactt 424
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gcatctcatatttacacaatggtcttcatgtactgaaataattgttctgccaatccactg 624
Query: 425 gcataggtgcacctaatcttccttttatctatgtgacagattaaatttgggattatttat 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 gcataggtgcacctaatcttccttttatctatgtgacagattaaatttgggattatttat 684
Query: 485 taaagtgattgtcgatttatgtctctaaagtagatcctttaagacattcacttatttcat 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 taaagtgattgtcgatttatgtctctaaagtagatcctttaagacattcacttatttcat 744
Query: 545 gatctgtactctgtgtaataatgtaatattctaattgtgttagaacaagctgagaatgaa 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 gatctgtactctgtgtaataatgtaatattctaattgtgttagaacaagctgagaatgaa 804
Query: 605 aaagggccagatttaagtaatatattaacatacttcccatttctttatagaggagttaac 664
||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct: 805 aaagggccagatttaagtaatatattaacatacttcccatttcataatagaggagttaac 864
Query: 665 aatatcacttcaaatataagctataattaaggagtctggaaattttcatgatgacctgaa 724
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 865 aatatcacttcaaatataagctataattaaggagtctggaaattttcatgatgacctgaa 924
Query: 725 taaaataaaataccttaattatatgaatgtcagctttgaattaaagaggagcagaatgaa 784
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 925 taaaataaaataccttaattatatgaatgtcagctttgaattaaagaggagcagaatgaa 984
Query: 785 cagaagtagatgctttcttccttctctg 812
||||||||||||||||||||||||||||
Sbjct: 985 cagaagtagatgctttcttccttctctg 1012
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 46
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 812
Length of database: 1212
Length adjustment: 10
Effective length of query: 802
Effective length of database: 1202
Effective search space: 964004
Effective search space used: 964004
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no049_e18.g1 MSMg01no049_e18.g1 CHROMAT_FILE:
MSMg01no049_e18.g1 PHD_FILE: MSMg01no049_e18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:11:09 2005
(651 letters)
>mm_chr4_111514829_111515879
Length = 1051
Score = 913 bits (472), Expect = 0.0
Identities = 496/504 (98%), Gaps = 1/504 (0%)
Strand = Plus / Minus
Query: 148 cttagttccctgagaatggggacagagagtggggagggaccacaagaggtagtctgctac 207
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 1051 cttagttccctgagaatggggacagagagtggggagggaccacaagaggtagtctgttac 992
Query: 208 aaaactgggattgagactgggggggttggatttggagaagagaaggaaaatgaaaattta 267
|||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||
Sbjct: 991 aaaactgggattgagact-ggggagttggatttggagaagagaaggaaaatgaaaattta 933
Query: 268 aagcttgcctacatgcctactggcctacttgcttcttttgcaggcttgactgctggattc 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 932 aagcttgcctacatgcctactggcctacttgcttcttttgcaggcttgactgctggattc 873
Query: 328 ccagggaatgtctgctagggtcttcagttggagttcctggcttgctccctccctcatatg 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 872 ccagggaatgtctgctagggtcttcagttggagttcctggcttgctccctccctcatatg 813
Query: 388 gtccagcaaattccaatttcctcccacttcctccaattccacctattcagaaagcctctg 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 812 gtccagcaaattccaatttcctcccacttcctccaattccacctattcagaaagcctctg 753
Query: 448 ggcagaaaagatgcaaaaaagcccagtcctgcatttctgacatacatgacaggtgtccca 507
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 752 ggcagaaaagatgcaaaaaagccaagtcctgcatttctgacatacatgacaggtgtccca 693
Query: 508 accccctcacctgaagtcacaagccaccaggtgtcccccccatccccaacacacacacag 567
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 692 accccctcacctgaagtcacaagccaccaggtgccccccccatccccaacacacacacag 633
Query: 568 agtttataaaaggctcccaagtcctaatctgcctgtgatttcttccattttcatctcctg 627
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 632 agtttataaaaggctcccaagtcataatctgcctgtgatttcttccattttcatctcctg 573
Query: 628 acattgatgaactccgccaggatc 651
| |||||||||||| |||||||||
Sbjct: 572 agattgatgaactcagccaggatc 549
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 651
Length of database: 1051
Length adjustment: 10
Effective length of query: 641
Effective length of database: 1041
Effective search space: 667281
Effective search space used: 667281
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
