Query= MSMg01no049_l05.b1 MSMg01no049_l05.b1 CHROMAT_FILE:
MSMg01no049_l05.b1 PHD_FILE: MSMg01no049_l05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:11:59 2005
(233 letters)
>mm_chr4_4103586_4104220
Length = 635
Score = 389 bits (201), Expect = e-113
Identities = 214/219 (97%), Gaps = 2/219 (0%)
Strand = Plus / Minus
Query: 17 gaattcatccctgagacgaatgctttctttgtaatcacttcaagagctgtaggagaggag 76
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 gaattcatccctgagacgtatgctttctttgtaatcacttcaagagctgtaggagaggag 345
Query: 77 cttccccattctctaagataccactgtttttcaccgtactctaagatatatgtcttttca 136
||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct: 344 cttccccattctctaagatacaactgtttttcaccgtactctaagatacatgtcttttca 285
Query: 137 gtgttttaaatgaaaagaaaaag--aaaaaaaagttccaatctctatgtgtttaaggaat 194
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 284 gtgttttaaatgaaaagaaaaagaaaaaaaaaagttccaatctctatgtgtttaaggaat 225
Query: 195 atatgtaggtgtgtgtgtgcgtgtgtgtgtgtgtgtgtg 233
|||||||||||||||||||||||||||||||||||||||
Sbjct: 224 atatgtaggtgtgtgtgtgcgtgtgtgtgtgtgtgtgtg 186
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 233
Length of database: 635
Length adjustment: 9
Effective length of query: 224
Effective length of database: 626
Effective search space: 140224
Effective search space used: 140224
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no049_l05.g1 MSMg01no049_l05.g1 CHROMAT_FILE:
MSMg01no049_l05.g1 PHD_FILE: MSMg01no049_l05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:11:59 2005
(175 letters)
>mm_chr4_4068943_4069516
Length = 574
Score = 308 bits (159), Expect = 2e-88
Identities = 171/175 (97%), Gaps = 1/175 (0%)
Strand = Plus / Plus
Query: 1 gcttagctcaggaagctcttgcagagtggctatccagtagggccagcttcagcacggttt 60
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 201 gcttagctcaggaagctcttgcagagtggctatagagtagggccagcttcagcacggttt 260
Query: 61 attctccttttcacaattccacaaacagataggactcttgaaagaaaaggtaacctaggg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 attctccttttcacaattccacaaacagataggactcttgaaagaaaaggtaacctaggg 320
Query: 121 tctggtcatcagaactgattttaaatgaaagccatggggggggggggagaggaga 175
|||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct: 321 tctggtcatcagaactgattttaaatgaaagccatgggggtggggg-agaggaga 374
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 175
Length of database: 574
Length adjustment: 8
Effective length of query: 167
Effective length of database: 566
Effective search space: 94522
Effective search space used: 94522
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
