BAC Information

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BAC

Clone NameMSMg01-049L11
Chromosome4 (Build37)
Map Location 16,900,390 - 16,901,082
singlet/doubletsinglet
Overlap genenone
Upstream geneNbn, Osgin2, Ripk2, LOC667150, LOC383994
Downstream geneLOC100040154, LOC667212, LOC100040173, Mmp16
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-049L11.T7 (MSMg01no049_l11.b1)MSMg01-049L11.TJ (MSMg01no049_l11.g1)
ACCAG279065AG279066
length1,2271,245
length of high quality
(start - end)		632 (39 - 670)698 (77 - 774)
definitionCHROMAT_FILE: MSMg01no049_l11.b1 PHD_FILE: MSMg01no049_l11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:12:01 2005CHROMAT_FILE: MSMg01no049_l11.g1 PHD_FILE: MSMg01no049_l11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:12:01 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NGGTTATTNNNNNNNACAGTGGGCGCTAAGACTCCTAAGGGAGAGGATCC
GCGGAATTCATTGTTTTAATTGCTGAGTAGTACTCCATTGTGTAAATGTA
CCACATTTTCTGTATCCATTCTCTGTTGAGGGACATCTGGGTTCTTTCCA
GCTTCTGGCTATTATAAATAAGGCTGCAATGAACATAGTGGAGCATGTGT
CCTTCTTACAAGTTGGAAAATCTTCCTGGTATATGCCCAGGAGAGGAATT
GTTGGATCTTCCGGTAGTACTATGTCTAATTTTCTGAGGAATCACCAGAC
TGATTTCCAGTGATTGTACCAGCTTGCAATCCCATCAACAATGGAGGAAC
ATTCCTCTTCCTCCACATCCTCACCAGGATCTGCTGTCACCTGAATTTTT
GATCTTAGCTATTCTGACTGGTGTGAAGTGGAATCTCAGGGTTGCTTTGA
TCTGCATTTCCCTGATGATTAAGGATGTTGAACATTTTTTCAGGTGCTTC
TCAGCTATTCGGTATTCCTCAGGTGAGAATTCTTTGTTTAGCTCTGTACT
CCATTTTTATTATTAGGGTCATCTTGATTTTTTGAAGTCCATCTTCTTGA
GTTCTTTGTATATATTGGATTAGTCCCCCATCTGACTTACGGTTGGTAAA
CCATCCTTTCCCAATCTGTTGGTGGCCTTTTCGTCTTATTGACAGTGTCC
TTGCAAATTTATGAGATCTCATTTGTCAATTCTTGATTTTACAGCCCAAG
CCACTGCTGTCTTGTTCAGGAATTTTTCCCCTGTGCCCATATCTTCCAGG
CTTTTCCCCCACTTTTTCCCCTATAAATTTCAGAGTCTCTCGTTTTATGT
GTAATTCCTTGATCCCTCTATAACTGTATTCTTTTAACTAAAATATAATG
TCTCTATTTTGCCTTCTTCTATAGCATAACTGCCCATTTATACCTTTTCA
TACTGTATAAATATGTTTTTTTTCTCCTACTAAATCTTTTAACTCTTTTA
TTTATACCAAACTATNTATCCTCTTTTATTATTTCCTCATGCTTTTTCTA
CATCTCTTTTGAATTTCTCTTATTATCTTAATTTTTTATATATCTTACAC
TTATTCCTATTTTATTATTTATTCTTATTATTCCTACTTTATCTTATCTA
TACTTTTAATTCACATTATTCTTTTTATACCCTATACTTTTTTTCTATTA
TTTCTTTCTCTCTTCATTTTATCTCTT

CATTTTTTNNNNNTATCATGGNAGCCTGGGGCGCCXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTTTTAAATTCATTTTTTTAATAG
TTGAGTAGTATTCCATTGCCTACATCTATTCCTTAATGCTTACTTTACTT
ATTCCTCTTTCTCTTATATTTTGCAAGTTGTTGCTAAATGAATCTCGTAA
AGGGGAGATGCTTGCAACCAATTTATTCATTGTCACATTAAATTTGTTGT
AGTGGAATCTAATGAAATGTTTTATTATCAATATCTTTAATTTCTAGATA
AAATTGAGTGTAAATCAATACAGCAATCTAGATAATTGTTAATTCTTCTT
AAAGTAACAGACTCATTCATAAAGACAACTTTCCCCCATAGTTAGCAATT
AAATCGCTGAAACTATCTATTTTATATGAAGAAAATCATATTTATCTCTG
CAGCTTTAGGCAGGGGTATTGTGACTCCCAAAGAGTAGCTTGAACTGGAA
TTAATTCAGGTATCCACATGAAGTATCTAAGCAATAAACTGATTAGAGAG
GAACAAGAGCTACATAGAAAAATTATCTCGGTGTGCTGATGCTTGACAAC
AATCTGATAAGCAGCTCTGAAAAGCTTACAATATGAAGCGTACCAGGAAA
GTACTCATTTACAGACAAAGGGTGACTTTCAACGTCTTGAATCAAAAGGA
TCTTGATATGCCTAAACTTTCACATATACTTCTCAGTTCATTGTCTATGA
ATTATGAGGCTTTTGTGATCCAGTCAAGAGGCATTCTGAAAATATGCAAT
TTTCCTACTCACAAAATGAAGTACCGTCCATTGTTTTCAAGGACTTCCTG
ATATTAATAAAGTAGATCTGAGGTATGGAAATTTTTTTCTTATTCATTCA
ATATTTTTTATTTTTATCTCGTCATATACTTATACTCTATTGAATGTTAT
TTTTTATTTCAACTAACACGTTCTTTTCTTTAATCCAAGACATATAAATA
TCTCCTCTATCTTCATACTATTATATTTTCTTTTTCATCTTATTTTCATT
TCTATATTCTATATTCATTTTTTTTCAATATTTTATCAATCCTTCTTTTA
TTCCTCTATATTTATATTTATTTGTTTATATTTTACTCTAATATACTATT
ATTATTTCCTTATATAATTTATTTAATTATNTTAATCATTTCTTCTTCTC
CTCATCCTACACTACATTTTCTACTTCTCTTAATATTTATTTCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no049_l11.g1 MSMg01no049_l11.g1 CHROMAT_FILE:
MSMg01no049_l11.g1 PHD_FILE: MSMg01no049_l11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:12:01 2005
         (698 letters)



>mm_chr4_16900108_16901204
          Length = 1097

 Score = 1234 bits (638), Expect = 0.0
 Identities = 680/694 (97%), Gaps = 1/694 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   taaattcatttttttaatagttgagtagtattccattgcctacatctattccttaatgct 64
           ||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||
Sbjct: 975 taaattcatttttttaatatttgagtagtattccattgcctacatctatttcttaatgct 916

                                                                       
Query: 65  tactttacttattcctctttctcttatattttgcaagttgttgctaaatgaatctcgtaa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 915 tactttacttattcctctttctcttatattttgcaagttgttgctaaatgaatctcgtaa 856

                                                                       
Query: 125 aggggagatgcttgcaaccaatttattcattgtcacattaaatttgttgtagtggaatct 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 855 aggggagatgcttgcaaccaatttattcattgtcacattaaatttgttgtagtggaatct 796

                                                                       
Query: 185 aatgaaatgttttattatcaatatctttaatttctagataaaattgagtgtaaatcaata 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 795 aatgaaatgttttattatcaatatctttaatttctagataaaattgagtgtaaatcaata 736

                                                                       
Query: 245 cagcaatctagataattgttaattcttcttaaagtaacagactcattcataaagacaact 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 735 cagcaatctagataattgttaattcttcttaaagtaacagactcattcataaagacaact 676

                                                                       
Query: 305 ttcccccatagttagcaattaaatcgctgaaactatctattttatatgaagaaaatcata 364
           ||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||
Sbjct: 675 ttcccccatagttagcaattaaatcactgaaactatctattttacatgaagaaaatcata 616

                                                                       
Query: 365 tttatctctgcagctttaggcaggggtattgtgactcccaaagagtagcttgaactggaa 424
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 615 tttatctctgcagctttaggcaggggtattgtgactcccaaacagtagcttgaactggaa 556

                                                                       
Query: 425 ttaattcaggtatccacatgaagtatctaagcaataaactgattagagaggaacaagagc 484
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 555 ttaattcaggtatccacatgaagtatctaagcaataaactgattagggaggaacaagagc 496

                                                                       
Query: 485 tacatagaaaaattatctcggtgtgctgatgcttgacaacaatctgataagcagctctga 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 tacatagaaaaattatctcggtgtgctgatgcttgacaacaatctgataagcagctctga 436

                                                                       
Query: 545 aaagcttacaatatgaagcgtaccaggaaagtactcatttacagacaaagggtgactttc 604
            ||||||||||||||||| |||||||||||||||||||||| |||||||||||||||| |
Sbjct: 435 gaagcttacaatatgaagtgtaccaggaaagtactcatttaaagacaaagggtgactt-c 377

                                                                       
Query: 605 aacgtcttgaatcaaaaggatcttgatatgcctaaactttcacatatacttctcagttca 664
           ||| |||||||| ||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct: 376 aacatcttgaattaaaaggatcttgatatgcctaaaatttcacatatacttgtcagttca 317

                                             
Query: 665 ttgtctatgaattatgaggcttttgtgatccagt 698
           ||||||||||||||||||||||||||||||||||
Sbjct: 316 ttgtctatgaattatgaggcttttgtgatccagt 283


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 698
Length of database: 1097
Length adjustment: 10
Effective length of query: 688
Effective length of database: 1087
Effective search space:   747856
Effective search space used:   747856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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