BAC Information

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BAC

Clone NameMSMg01-050L12
Chromosome4 (Build37)
Map Location 17,551,255 - 17,551,697
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040154, LOC667212, LOC100040173
Downstream geneMmp16
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-050L12.T7 (MSMg01no050_l12.b1)MSMg01-050L12.TJ (MSMg01no050_l12.g1)
ACCAG279709AG279710
length1,2321,320
length of high quality
(start - end)
557 (99 - 655)472 (120 - 591)
definitionCHROMAT_FILE: MSMg01no050_l12.b1 PHD_FILE: MSMg01no050_l12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:49:25 2005CHROMAT_FILE: MSMg01no050_l12.g1 PHD_FILE: MSMg01no050_l12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:49:25 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTCCTATAGGGAGAGGATCCGCGGAATTAAGGCCCATACATAAACACGTT
ATAAGCACTATTCAGCAAAACAGTAGCCAACATCAAACCTTTATGGAGAG
AAACTTGAAGCAATCCCACTAAAATCACGGACTAGACAGGCTTCCCACTC
TCTTGCTATCTATTAAATATAGTACTTTAAATTCTAACTAGAGCAAGTAG
ACAAAAGGAGGTCCAACCGATAAAAATTGGAAAAGAAGAAGACAAAATAT
GATCACTTGCAGATGATATGATAGTATGCTTAAGAGAGCCCAAACATTCC
ACCAGAAAAGTGCTAAACCTGATAATGACTTCAACAAAATGGCCTTCTTC
TACTCAAAGAGTAAGCTGAGAAAAAATGTAGGGTAACAACACCCTTCACA
ATAATCACAAATAATATAAAATACCTTCATGTGACTCTAACCAAACAAGT
TCTGTATGACAAGAACTACAAGTATCTGAAGAAAGAAATCAAATATCTCA
GAAGACTAAACGATCAACAAGCCTCATGGATTGACAGGATTGATATACTA
AACATGGCCATCATGCTGAAAGCAGTCTACAGATTTAATGCAATCCCCTT
CAACCTTCCAACTCAATTCTCCATAGAGTTAGAAAGAGTAACTCTCAAAT
TCACTTGAAATACCAAAAAACCCATGATAATAAAACCTATTCTTAACACT
AAAAGAACTTCTGGGGGCATCACCATCCATGATCTTGAGCTGTATTAAAG
AGCAATACTGATACAAACTTCATGGAACTGGTATAGAGGCAGACTCGTAG
ATCAATGAACAGAATTGAAGACCCCGAACTGAACCCCCACCCCCTATGGT
TACTTGAATTTCGACAAAGGAGCTAAAATAATCCCTGAGGAAGCGGGGTG
GGTCCATCACCTTTTTCAACCAATGGCGCTCTGGTTAACTTGGAAGTCCC
GCATGTAATAAGAATTGGCATTTGACCCATTTCCTAATCTCCTTGGTAAA
AGCCCCCCCTCCCTAATGGAACCAGGTACCCCCCCATTAAATCCCGGATT
CCTTTGGATTTATCTCCTAAAAAAAATAAAGCGGTAAAAAACCCTCAAAC
CCCATGGGCTTCCCCGGCAACAAATTCCCCCCTGGAAATAAACACACCCA
ATGGGTCCTGATTATTCTTGGACTTTCCTAGAATCTCATACCCTGCGTGT
CCCTCCCNTTCCAAGTGGAAACAAGTCCTTCT
TTTATGATGTGAGGCTGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXCTTTTACTCTGATGGTATTTTCAGAATGAGATTA
GCTAAACTTATAATATTGTGTCCATTTTCTCTCCTCCTATCATTGATTCA
AGAATAAAACCATAATATTTAGGAAAGCTTGAAATAAGTTCCCTTTTCAT
ATGAATTTATATATCCCTGCTGGTGAGTTTCCTTAACTTTTCTTGGAAAT
TCTTATTTCACTAGCTTTTAGACCATGGGATTTTTTTTTTTTGTCATAAA
GGAATTGAATTTATTTTTAAAAAAGCATATGCCTTATGTAGAGTCTAATC
AAATATCTTAATTTTTTTAAACTAGGTATTTTCTTCATTTACATTTCCAA
TGCTATCCCAAAAGTCCCCCATACACCCCTACCCACTCCCCTCCCCACCC
ACTACCACTTCCTGGCCCTGGCGCTCCCCTGTACTGAGGCATATAAAGTT
TGCACGACCGATGGGCCTCTCTTTCCACTGATGGCCAATACATACATCTG
ATACATACGCAGCTAGAACCATGAGCTGATACATATGCAGCTCGAAACAC
GAGCTCTGCGGCGGGGGGGGGGACTGTTTTATCTTTTCCTCTCTATTTTT
CTTTTCCTCTTTTTTCCTTTTTACTTCTTTCTTAATCTTTCTCTCTTTCT
TTCTTCCCCTTTTTTTTTACTTCCTTCCTTCTCTTTTTTTTTATTTCCTT
ATTATTTTTTTCTTTTTTCCTCTTAATCTCTTCTCTTTACTTTTTTCCAT
TTTTCTCCCTTTCCTTTCTTTTTTTATTTATCACTCTTCTCTTTTTCTTT
CCTTCTATTATTACTATTTTTCTTTATGCTACTCTCTCTTTTTTCTCTCA
TCTTTCTTCTTCTTTTCTTCTTTCCCTTTCTACCCTAATTCACTCATTAC
ATCTTCCTTCTTCTTTTTATCTATTCTTTCTTTTCTCCTTATTCTTTTCT
AATCACTTTCACTTCTATTTCTTCCTTTCCTTCTTCTTTTCTTTTCTCTT
TTCTCCTTCTTCCATATATTTTACTTTTTCTGTTCATCCTNTTCCCCTCT
TATTTTCCTCTTATTCTAAATCTCTACCCTACTCACTACTCCTTGTATTC
ACTCTTTTCTATCAACTCTCTATATACGTTTCTTATCTCTCCCCTCACTA
TCATATCACTTATCCTGTCATNCTTCTATTTACTCTACACCTACGCTACC
CTTATATCTGTACTCTGTTCACTCTCGTTCCCCTCCATATTTCTTATATT
ATTTGTGTATATTTTATATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no050_l12.g1 MSMg01no050_l12.g1 CHROMAT_FILE:
MSMg01no050_l12.g1 PHD_FILE: MSMg01no050_l12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:49:25 2005
         (472 letters)



>mm_chr4_17551255_17552128
          Length = 874

 Score =  785 bits (406), Expect = 0.0
 Identities = 434/444 (97%), Gaps = 3/444 (0%)
 Strand = Plus / Minus

                                                                       
Query: 2   tccattttctctcctcctatcattgattcaagaataaaaccataatatttaggaaagctt 61
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 tccattttctctcctcctatcattgattcaagaataaaaccataatatttaggaaagctt 384

                                                                       
Query: 62  gaaataagttcccttttcatatgaatttatatatccctgctggtgagtttccttaacttt 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 gaaataagttcccttttcatatgaatttatatatccctgctggtgagtttccttaacttt 324

                                                                       
Query: 122 tcttggaaattcttatttcactagcttttagaccatggga--ttttttttttttgtcata 179
           ||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||
Sbjct: 323 tcttggaaattcttatttcactagcttttagaccatgggattttttttttttttgtcata 264

                                                                       
Query: 180 aaggaattgaatttatttttaaaaaagcatatgccttatgtagagtctaatcaaatatct 239
           |||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct: 263 aaggaattgaatttatttttaaaatagcatatgccttatgtagagtttaatcaaatatct 204

                                                                       
Query: 240 taatttttttaaactaggtattttcttcatttacatttccaatgctatcccaaaagtccc 299
           ||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 taa-ttttttaaattaggtattttcttcatttacatttccaatgctatcccaaaagtccc 145

                                                                       
Query: 300 ccatacacccctacccactcccctccccacccactaccacttcctggccctggcgctccc 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 144 ccatacacccctacccactcccctccccacccactaccacttcctggccctggcgttccc 85

                                                                       
Query: 360 ctgtactgaggcatataaagtttgcacgaccgatgggcctctctttccactgatggccaa 419
           |||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||
Sbjct: 84  ctgtactgaggcatataaagtttgcaagaccgatgggcctctctttccaatgatggccaa 25

                                   
Query: 420 tacatacatctgatacatacgcag 443
           ||||||||||||||||||| ||||
Sbjct: 24  tacatacatctgatacatatgcag 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 472
Length of database: 874
Length adjustment: 10
Effective length of query: 462
Effective length of database: 864
Effective search space:   399168
Effective search space used:   399168
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)