BAC Information

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BAC

Clone NameMSMg01-051L23
Chromosome4 (Build37)
Map Location 30,594,210 - 30,594,328
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC665185
Downstream geneLOC619906, LOC100040864, LOC100040891
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-051L23.T7 (MSMg01no051_l23.b1)MSMg01-051L23.TJ (MSMg01no051_l23.g1)
ACCAG280418AG280419
length1,3041,379
length of high quality
(start - end)
119 (137 - 255)81 (173 - 253)
definitionCHROMAT_FILE: MSMg01no051_l23.b1 PHD_FILE: MSMg01no051_l23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:51:51 2005CHROMAT_FILE: MSMg01no051_l23.g1 PHD_FILE: MSMg01no051_l23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:51:52 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TATGGGCGCTAXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCATGATG
GCAATGACCTTGTTATAGCCCCATTTGCAGCCCTTCTCCTTATCTTATGG
ACCTATATACTTTGTGACCACCCCCCCTTAAGTGTTCTCTGAGGAACGGG
AAGAAACTTATCTTATCTCTTGGGTCTCCTAAATTATTAGGAGGCATCTC
AATCCAGGCACTAGTTTTGTTTGCTTGTTTGCTTGTTTCCCATTGTTTTA
TTAACATGCATGGTATCTCCTTTGACATATCTCTTCCATATCTAGCATAT
TGTTACATAACAATGATTATTCCTGTGTTACTTGTACTATTTATTTGATA
TCTATGTTAATTATCCTTCATTAGACATTTCGCCGATCTTCTTTTTTTTT
TTAGTCCGTAATTGATCTTGTTTTTCTGTTCCTCCTGAACTGCCTTTTAT
TTTCTTTCCCCTGTTTCTTGCTCATATGCATTCCTTATCTTTTGATTTTG
TTTCTTTGTTTTTCTTCCTTTTTTTACTCTTTTTTTCTTTTCTCTTTCTT
TCTTTCTTCTCCTCCTTCTTTTCCCATTTCTTTTCTTCTCTCTTCTTTTT
TTTCTTATCTTTTTCTTCTCTCTTTTTCTTCTTTTTCTTTCTTCTTTTCT
TCTCTTCTTTTTTTTTTTTTTCTCTTTCTTTTCTTCTCATACTTTCTCTC
TTCTTTTTTCTTATCTTTCTTTTTTCTTTCTCTTTTTTCTTTTTTTCTTT
TCTTTTTTTTACTCCTTTTTTTTTTTCCTTTCTTCTTCTCTCTTTTTTCT
TTTCTTTTTTCTCACACTTATCTCTTCTTCCCTTTTTTCTTTCCTTCTTT
TCTTTTTCTCTTTCTTTTTTTTTTTCTCTCTTTCTTCTTTCTCTTTCTTC
TTTCCTCTTCCTTTTTCTTCTTTCTCTTTCTCTCTTTTCCCTTTCTCTCT
TTTTCTATTTTCTTCTTTTTCTTTTGCTTCTCCTCTTTCTCTCTTTTTTT
TTTTTTTCTCTCTTTCTTTTTTTCTTCTTTTCTTCTTTTTTCTTCTTTCT
TCTCCTTTCTTTTTTTTTCTTCTCTTCTTCTTTTTCTCCTTTTTTTTTTC
CTCCTTCTTTCCTTCTCCTTTCTTTTTCTTCTGCTTCTCTTTCTTATTAT
CCTCTTTCATTTTTTTCCTTCTTCACTCTTCTTTTTTCTTTTCTTCTCCT
TCTTCTATTTTTTTTTTACTCTTTTCTTCTTTGTTCCTCTCCTCCTCATT
TTCTTCCTCTTTCTCTCCTTCTCCCTTCTCCTTCTCTCTTCTCTCCTCTC
CTCT
TTTTTATGATGTGAGGCGTGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXCTTTTAGAAGCTGGATTCCAGAAACACAAATAA
TCCCATTAACAAATGGGGTACAGAACTAAACCCCAGAATTCTCAACTGAG
GAATACTCAGTGGCTGAGAAGCACTTGAAAAAATGTTCAACATCCTTAAA
CATCAGGGAAATGCAAATCAAAACAACCTTGAGATTACACCTCATACTAC
TTATAATGGCTGATATCAAAAATTCAGGTGGCAGCAGATGCATGCGAGGA
TGTGTAAAAGAGAAACACTCTTCCATTGCTGGTAGGATTGCAAGTTTGTA
CCATCATTCTGGAAGTCAGTTCTGGAGTTTTCTCATAATATTGGATTATA
TTATTTTTTTTATTATCCTCTCTTATCCTTCCTTCTGTTCTTTATACTTC
ATAAAAAGTTCTCATTTGTTTCATAATTTTTCCCTGTCTTTCCTTATGTT
TTACTGTCTTTCTTTATTTTTTCATTTTTTTTGATTTTTTGTTATTTTTT
CCCTTTATGTTCTCTTCTTTTTATTGTTATCTTTTTTTCTTCTTTTTTTT
TATTTTCTCTTTTGTCCTTTTTTTTTTCTTTCTTTATTTTATTTATTTTT
TATTCTTTTCTCATTTTTTTATTATTTTCTTTTCTTCCTTTACTTCTCTT
CTTCTAATCTACTCTTCATCTATTCTTTTTTTTTCTATATCTTTTCTTTT
TACTTTTCTCTTTCTATCTCTCTTTCTATTCTCTTTTTTTTATTATTCCT
TATTCTTTTTTTTATTTTTTTTTTTTCTTTTTTTTTTTTATTTTTTTCTT
TTTTTTTTATTTTTTTTACCTCCTTTTCTTTTCTACTTTTTTCTCTTTTT
TCTTTTCTTTTTTTCTTTTATTTTTTTCTTTCTCTTTTTTTTTCCTTTCT
TTTTCTTTTTTTTTTTTCTTTTCTTTTTTTTTGTATTTTTTTATTTCTTT
TTTTTTTTTTTTTTTTTTGTTTTCTTTTTTCTTATCCTTTCTTTTCTCTT
TTTTCTTCTTTTATTTTTTTTCTTACTATTCTTTTTTCTCTTTTATTTTC
TTTTTTTTTTTTCTTCTCTTTTTTGCTTTTTTTTTTTTCTTTTTTTTTTT
TATTCTTTATATTTTTTCTTCTATTTTTTATTTTTTTTTTTCCTTCTTTT
TATTTTTTTTTTTCTTCTTTTTCTTTTATCTTCTTTCTTTCTTGTTTTTT
CTTTTTTCTTTTTTCTTATCTGTTCCTTTTCTTCTTTTTTTCTTCTTTTT
CCTTTTTTTCTTTTTCCCCCGATTTTATTTTGTTATTATTGTTTTTTTCC
CCTTTATTTTTTTTTTTTTTCTTCTTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no051_l23.b1 MSMg01no051_l23.b1 CHROMAT_FILE:
MSMg01no051_l23.b1 PHD_FILE: MSMg01no051_l23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:51:51 2005
         (119 letters)



>mm_chr4_30594010_30594528
          Length = 519

 Score =  215 bits (111), Expect = 9e-61
 Identities = 117/119 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctctgaggaacgggaagaaacttatcttatctcttgggtctcctaaattattaggaggca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctctgaggaacgggaagaaacttatcttatctcttgggtctcctaaattattaggaggca 260

                                                                      
Query: 61  tctcaatccaggcactagttttgtttgcttgtttgcttgtttcccattgttttattaac 119
           ||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||
Sbjct: 261 tctcaatccaggcactagttttgtttgtttgtttgtttgtttcccattgttttattaac 319


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 4
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 119
Length of database: 519
Length adjustment: 8
Effective length of query: 111
Effective length of database: 511
Effective search space:    56721
Effective search space used:    56721
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)