XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCA
ACAAAGATTTCCAAACCAAAGTCTCTGTTTATTCACTTGTATACTCACTC
ATTTAAAAAAAAACCAGAAAAATAATCTACCATGGAAATCATAACTCTCT
ACATGCAGAGTTTTCTTCTAAATTATTGACTCTTGGTTTAAAAAAAAATC
ATAAAGCATCCCTAGAGTGTTTTGGTCCAAAGTTCTTTCTCTTTGGTAAG
TTTTGGTACAATGTCAGGCAAACTCTCCACCACTGAGCTCTGTCCCCAAC
CCAAGCTTCAGCACAATGGGCTGAGCTTTTCCAGTTGGACTTTAACTCTG
ATTCATTCATTCAATAATGTTGAGTGTCTTCCTTATATCAAAATATGAGA
GAGGTCAATTGTACAGTAAGATAGAGTCCTTGCATCTGAAGACTATGCTG
TGTAATGAAGGAAGCAGAGAAATGAATCCGGAATTTCACTATGACTTTTG
CAATTTTACAAATTTCATAGAATAAATAGCAATGGATAACGTTTGATAAG
AATTAAACTACCCCCTACCCCCCACAATACTAAGCACCTTAAAAAGATGG
AATGAGTGTAGAGTGTATGATTGCTATTTTCTTATCTAAGCCTACTTCCT
GCCCAGCTGGTCTGCAGACTTACTGAGAACAAGAAATCCCCTCCTCGGTG
CTTGGTGTACCTTTGTG

ATGTGCGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGAGAAGCAC
CTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAAC
AACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAATTC
AGGTGATAGCAGATGCTGGCGTGGATGTGGAGAAAGAGGAACACTCCTCC
ATTGTTGGTGGGAGTGCAGGCTGGTACAACCACTCTGGAAATCAGTCTGG
CGGTTCCTCAGAAAATTGGACATAGTACTACCGGAGGATCCAGCAATACC
TCTCCTGGGCATATATCCAGAAGATGCCCCAACTGGTAAGAAGGACACAT
GCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAA
GAACCTAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACAT
CTACACAATGGAGTACTACTCAGCTATTAAAAAGAATTAATTTATGAAAT
TCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAACA
CATTCACAAAGAAACTCACACAATATGTACTCACTGATAAGTGGATATTA
GCCCCAAACCTAGGATACCCAAGATATAAGATATAATTTGCTAAACACAT
GATACTCAAGAAGAATG

Query= MSMg01no052_a10.b1 MSMg01no052_a10.b1 CHROMAT_FILE:
MSMg01no052_a10.b1 PHD_FILE: MSMg01no052_a10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:52:31 2005
         (664 letters)



>mm_chr4_54373358_54374421
          Length = 1064

 Score = 1268 bits (656), Expect = 0.0
 Identities = 659/660 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccaacaaagatttccaaaccaaagtctctgtttattcacttgtatactcactcat 64
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 864 gaattccaacaaagattttcaaaccaaagtctctgtttattcacttgtatactcactcat 805

                                                                       
Query: 65  ttaaaaaaaaaccagaaaaataatctaccatggaaatcataactctctacatgcagagtt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 ttaaaaaaaaaccagaaaaataatctaccatggaaatcataactctctacatgcagagtt 745

                                                                       
Query: 125 ttcttctaaattattgactcttggtttaaaaaaaaatcataaagcatccctagagtgttt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 ttcttctaaattattgactcttggtttaaaaaaaaatcataaagcatccctagagtgttt 685

                                                                       
Query: 185 tggtccaaagttctttctctttggtaagttttggtacaatgtcaggcaaactctccacca 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 tggtccaaagttctttctctttggtaagttttggtacaatgtcaggcaaactctccacca 625

                                                                       
Query: 245 ctgagctctgtccccaacccaagcttcagcacaatgggctgagcttttccagttggactt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 ctgagctctgtccccaacccaagcttcagcacaatgggctgagcttttccagttggactt 565

                                                                       
Query: 305 taactctgattcattcattcaataatgttgagtgtcttccttatatcaaaatatgagaga 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 taactctgattcattcattcaataatgttgagtgtcttccttatatcaaaatatgagaga 505

                                                                       
Query: 365 ggtcaattgtacagtaagatagagtccttgcatctgaagactatgctgtgtaatgaagga 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ggtcaattgtacagtaagatagagtccttgcatctgaagactatgctgtgtaatgaagga 445

                                                                       
Query: 425 agcagagaaatgaatccggaatttcactatgacttttgcaattttacaaatttcatagaa 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 agcagagaaatgaatccggaatttcactatgacttttgcaattttacaaatttcatagaa 385

                                                                       
Query: 485 taaatagcaatggataacgtttgataagaattaaactaccccctaccccccacaatacta 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 taaatagcaatggataacgtttgataagaattaaactaccccctaccccccacaatacta 325

                                                                       
Query: 545 agcaccttaaaaagatggaatgagtgtagagtgtatgattgctattttcttatctaagcc 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 agcaccttaaaaagatggaatgagtgtagagtgtatgattgctattttcttatctaagcc 265

                                                                       
Query: 605 tacttcctgcccagctggtctgcagacttactgagaacaagaaatcccctcctcggtgct 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tacttcctgcccagctggtctgcagacttactgagaacaagaaatcccctcctcggtgct 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 664
Length of database: 1064
Length adjustment: 10
Effective length of query: 654
Effective length of database: 1054
Effective search space:   689316
Effective search space used:   689316
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)