Query= MSMg01no052_c22.b1 MSMg01no052_c22.b1 CHROMAT_FILE:
MSMg01no052_c22.b1 PHD_FILE: MSMg01no052_c22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:52:43 2005
(598 letters)
>mm_chr4_56201071_56202068
Length = 998
Score = 754 bits (390), Expect = 0.0
Identities = 459/518 (88%), Gaps = 56/518 (10%)
Strand = Plus / Minus
Query: 137 tcgatgattgcaataactgacagataaatttgataaggcagataaaaatgaatataatag 196
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 998 tcgatgattgcaataactgacagataaatttgataaggcagataaaaatgaatataatag 939
Query: 197 aaaatgatgggcaaaattcatttcgttgtgaaagtttacaagagcaagggaatg------ 250
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 938 aaaatgatgggcaaaattcatttcgttgtgaaagtttacaagagcaagggaatgacacac 879
Query: 251 --------------------------acagagagagagagagagagagagagagag---- 280
||||||||||||||||||||||||||||||
Sbjct: 878 acacacacacacacacacacacacacacagagagagagagagagagagagagagagagag 819
Query: 281 --------------------gtgcatacataaaggagaccaaccctgaagatcaacccag 320
||||||||||||||||||||||||||||||||||||||||
Sbjct: 818 agagagagagagagagagaagtgcatacataaaggagaccaaccctgaagatcaacccag 759
Query: 321 aataaattaacttgcaattggtgacactgtgataatacatgggacccgtatattttaaat 380
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct: 758 aataaattaacttgcaattggtgacactgtgataatacatgggatccatatattttaaat 699
Query: 381 gcacatcttcaaacccagcagaacaacttgctcacccatgattctgcaactcagctcatt 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 698 gcacatcttcaaacccagcagaacaacttgctcacccatgattctgcaactcagctcatt 639
Query: 441 tttcctttactcccaatttctactgctcccccctgccatattttctgtgactgtaagtat 500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 638 tttcctttactcccaatttctactgctcccccctgccatattttctgtgactgtaagtat 579
Query: 501 tttcagcaggttctcatgccccactaagttattagcacctcttagggtacttcatgactt 560
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 578 tttcagcaggttctcatgccccactgagttattagcacctcttagggtacttcatgactt 519
Query: 561 catcttcttgctatgtgttctcatagaaacagaataca 598
||||||||||||||||||||||||||||||||||||||
Sbjct: 518 catcttcttgctatgtgttctcatagaaacagaataca 481
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 43
Number of extensions: 14
Number of successful extensions: 14
Number of sequences better than 10.0: 1
Number of HSP's gapped: 11
Number of HSP's successfully gapped: 1
Length of query: 598
Length of database: 998
Length adjustment: 10
Effective length of query: 588
Effective length of database: 988
Effective search space: 580944
Effective search space used: 580944
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no052_c22.g1 MSMg01no052_c22.g1 CHROMAT_FILE:
MSMg01no052_c22.g1 PHD_FILE: MSMg01no052_c22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:52:43 2005
(538 letters)
>mm_chr4_56061301_56062238
Length = 938
Score = 994 bits (514), Expect = 0.0
Identities = 529/534 (99%)
Strand = Plus / Plus
Query: 5 ggaatcatcttttgagatggctatatgtgtatgtccatgagctggcgggtgtggctgtga 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 ggaatcatcttttgagatggctatatgtgtatgtccatgagctggcgggtgtggctgtga 264
Query: 65 ccaaaccccatgaggatctccacaggctattggttagcagaaactatgctccttttttgc 124
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 265 ccaaaccccatgaggatctccacaggctactggttagcagaaactatgctccttttttgc 324
Query: 125 aaaactggggtcttttctctgagcctcctagcctgggcaagcatattttatgatagaatg 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aaaactggggtcttttctctgagcctcctagcctgggcaagcatattttatgatagaatg 384
Query: 185 cttttaaggattttctccactggagccctgggggggcggagggggggaggaaacaatgga 244
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 385 cttttaaggattttctccactggagccctgcgggggcggagggggggaggaaacaatgga 444
Query: 245 aagtaccgatggctaaagtgcagtgccaggagagggtgaaagatggagagaagtggagga 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aagtaccgatggctaaagtgcagtgccaggagagggtgaaagatggagagaagtggagga 504
Query: 305 taaagctaggctggagaaatgagaaaactggaaatacaaacacacagaccctctgtgtcc 364
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 505 taaagctaggctggagaaatgagaaaattggaaatacaaacacacagaccctctgtgtcc 564
Query: 365 atatgaggcagtctagtgagtcagggtgaacctgagcctggtggacgcatccttccacac 424
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 565 atatgaggcagtctagtgagtcagggtgaacctgagcctggtggactcatccttccacac 624
Query: 425 tggccagcaaggatctaagagcccttccctggagaaggcactaggtcagccttcctcccc 484
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 625 tggccagcaaggatctaagagcccttccctagagaaggcactaggtcagccttcctcccc 684
Query: 485 tccccatgataaacgaataaatggcccggccctgtttagttcccctggggcaaa 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 tccccatgataaacgaataaatggcccggccctgtttagttcccctggggcaaa 738
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 538
Length of database: 938
Length adjustment: 10
Effective length of query: 528
Effective length of database: 928
Effective search space: 489984
Effective search space used: 489984
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
