BAC Information

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BAC

Clone NameMSMg01-052G21
Chromosome4 (Build37)
Map Location 43,918,443 - 43,918,689
singlet/doubletsinglet
Overlap geneReck
Upstream geneN28178, Dnajb5, 1700022I11Rik, Vcp, Fancg, Pigo, Stoml2, B230312A22Rik, Unc13b, 4930417M19Rik, Rusc2, 4833436C18Rik, Tesk1, Cd72, Sit1, Rmrp, LOC622404, E130306D19Rik, Car9, Tpm2, Tln1, Creb3, Gba2, 1110029E03Rik, LOC100039672, LOC100040179, Npr2, Spag8, Hint2, Serf2-ps, 4930412F15Rik, Olfr70, Olfr71, LOC100039781, 5430416O09Rik, A630077J23Rik, GA_x5J8B7W5BNN-892919-892147, Olfr159, Olfr29-ps1, Olfr156, LOC100040268, Olfr155
Downstream geneGlipr2, Ccin, Clta, Gne, LOC100040313, OTTMUSG00000007209, Rnf38, Melk, Pax5, 5730488B01Rik, LOC545618, Zcchc7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-052G21.T7 (MSMg01no052_g21.b1)MSMg01-052G21.TJ (MSMg01no052_g21.g1)
ACCAG280920AG280921
length724717
length of high quality
(start - end)
248 (73 - 320)255 (67 - 321)
definitionCHROMAT_FILE: MSMg01no052_g21.b1 PHD_FILE: MSMg01no052_g21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:53:02 2005CHROMAT_FILE: MSMg01no052_g21.g1 PHD_FILE: MSMg01no052_g21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:53:03 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCGAAGCNGCGCGGAATTCAC
TATGTAATTACAACTAGCCACAAACTCACAGAGATCTCCCTGCCATTGCC
TCCTGAGACCTGGGATTGCACGATGTACCGCCACACCTGACAGTAGATAA
CTCTTTAGGGTATAATAGTTAGTGATCCATGGGAGATGATTTGGAAGAGG
GGATCTGTTGGATTTTATTTGATTATATCTGGGAAGACTGTACTCAGCAA
GATGTGTAGAAAGATGACGACTGTGTGTTTTGGTGTGTGTGTGTTGCATG
CCTTTAATGAATCTGTTTTATTGNGTTACCTGGTCTATATAGTGAGTTTC
AGACCATTCTGGGCTACCTAGTGAAATCTTATCTCAAAAAGAAAGTTGGT
AGAGAAGATTCTAGAATTGTCATTAAATAGGAGTAATTAAAGATATGGCG
TCTGGGCTAGGGAAGTGGCTTCGTGATAGAGCATGATACCCTGGCCTCTA
CTCCTGGTACGACAAAAACAAACTATAAAGCATGAGAAAATAAGCCTCCC
AGAGGAAGGTCATTTAAGATGAGACAAGATCTCGGCTAGTCTGATACGAT
CAAGACTGTAGGCTTACTCTTACACAGCTAATGTATGGACGGGTAAAGAC
AAAACCAGGTATTTTTTTTTTTTTCAGGAGTTTCTCCTAGGACAATGCTA
AACGAACGAGCATTGCACCCCAGC
TGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXCCTGAATGTTCACAGAAAAGGGGAGTGGAGGGCT
ATAGTCATTGGCGGGATGGAACTGAAGCTGAGAGGGGGATTAATGGATGT
CTGTTGTAGGATTATCAGGGACTAATTTTTATGGCCGGTCGTAACTGTCT
GTGACCTCTGATTATCTTTTTCTATGATTTAAACATGGGGCCCTAATCTC
CTTTGAGTTTGTTATTTCTTAAGGTCTCAAGGACAGGCACCTGGAGAGTT
TGGCCATTCATCAGGAACGTTGCTAGTTTTGGCGATGCAGAGGAGGGGAG
GATGTCTCATGTTTGGCTCCTCGGGATGTCTTCATCAGGTGGTGGTGGTG
GGGTTATGGGCAGGGTCATTCTAAATTCAGGCTGGGTTTCCTTGAACCAG
CTAGAGAGGGGGAGGGAGCCCTGGGCTTGCTGCAGGGGGACGCAGTACAG
AAACCAGCTGCACACATACTGCTCTTGCCACGGAAAGGAGGGGGCTTCTG
TGGAAAAATACGCAGAGGCAAACCGTCTGCACATAACACTGGAGTCTGTT
TGGTGAGGCTTCCAAGAAGCATGGCAATTGACTACAGAGAGTTAGCATCA
GTAATTCGGGGGCTACAACATCTCAATAGTAGACGGGTCATCTCTAACAT
CAATTTGGGTCCCAGCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no052_g21.b1 MSMg01no052_g21.b1 CHROMAT_FILE:
MSMg01no052_g21.b1 PHD_FILE: MSMg01no052_g21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:53:02 2005
         (248 letters)



>mm_chr4_43918174_43918823
          Length = 650

 Score =  422 bits (218), Expect = e-122
 Identities = 240/248 (96%), Gaps = 4/248 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   aactcacagagatctccctgccattgcctcctgagacctgggattgcacg-atgtaccgc 59
           |||||||||||| |||||||||||||||||||||| |||||||||| | | |||||||||
Sbjct: 516 aactcacagagacctccctgccattgcctcctgagtcctgggattg-aggtatgtaccgc 458

                                                                       
Query: 60  cacacctgacagtagataactctttagggtataatagttagtgatccatgggagatgatt 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 cacacctgacagtagataactctttagggtataatagttagtgatccatgggagatgatt 398

                                                                       
Query: 120 tggaagaggggatctgttggattttatttgattatatctgggaagactgtactcagcaag 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 tggaagaggggatctgttggattttatttgattatatctgggaagactgtactcagcaag 338

                                                                       
Query: 180 atgtgtagaaagatgacgactgtgtgttttg--gtgtgtgtgtgttgcatgcctttaatg 237
           | |||||||||||||||||||||||||||||  |||||||||||||||||||||||||||
Sbjct: 337 aagtgtagaaagatgacgactgtgtgttttggtgtgtgtgtgtgttgcatgcctttaatg 278

                   
Query: 238 aatctgtt 245
           ||||||||
Sbjct: 277 aatctgtt 270


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 248
Length of database: 650
Length adjustment: 9
Effective length of query: 239
Effective length of database: 641
Effective search space:   153199
Effective search space used:   153199
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)