Query= MSMg01no052_l12.b1 MSMg01no052_l12.b1 CHROMAT_FILE:
MSMg01no052_l12.b1 PHD_FILE: MSMg01no052_l12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:53:25 2005
(628 letters)
>mm_chr4_35871913_35872935
Length = 1023
Score = 748 bits (387), Expect = 0.0
Identities = 397/403 (98%), Gaps = 5/403 (1%)
Strand = Plus / Minus
Query: 1 ttcactcacatcagtatgatcctacattacctttaatttctcttctgtggtttccattac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 ttcactcacatcagtatgatcctacattacctttaatttctcttctgtggtttccattac 339
Query: 61 ccttggttctcataatctattctgttccaagacactcagtgaaaaaaaaaaaaacaacaa 120
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 338 ccttggttctcataatctattctgttccaagacactcagtgaaaaaaaaa-----aacaa 284
Query: 121 tagtctgttgttttaattctcacagcagttagaacagcatgatgaagctccacaccaccc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 tagtctgttgttttaattctcacagcagttagaacagcatgatgaagctccacaccaccc 224
Query: 181 cctagaacgtgcgtgtcctgccattcagtgtgtctgcactctgtatgctgcctgcccatt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 223 cctagaacgtgcgtgtcctgccattcagtgtgtctgcactctgtatgctgcctgcccatt 164
Query: 241 agttattgagtgtctcaattactatttcggctgtcatgttgcaaaggtgctctcactcaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 163 agttattgagtgtctcaattactatttcggctgtcatgttgcaaaggtgctctcactcaa 104
Query: 301 ctacttcacttaataagaactgcagaatgcaagcatgatgctgtgtatttagatatgtaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103 ctacttcacttaataagaactgcagaatgcaagcatgatgctgtgtatttagatatgtaa 44
Query: 361 caagaaagtttttgctctcagcaaaaaactgtgaaagttcttg 403
||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 43 caagaaagtgtttgctctcagcaaaaaactgtgaaagttcttg 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 628
Length of database: 1023
Length adjustment: 10
Effective length of query: 618
Effective length of database: 1013
Effective search space: 626034
Effective search space used: 626034
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no052_l12.g1 MSMg01no052_l12.g1 CHROMAT_FILE:
MSMg01no052_l12.g1 PHD_FILE: MSMg01no052_l12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:53:25 2005
(579 letters)
>mm_chr4_35824119_35825097
Length = 979
Score = 1011 bits (523), Expect = 0.0
Identities = 571/599 (95%), Gaps = 22/599 (3%)
Strand = Plus / Plus
Query: 1 atttacaaagtctgtatttcctaaaattgaaacttgcctgaagcaaaagaacccttgcaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 183 atttacaaagtctgtatttcctaaaattgaaacttgcctgaagcaaaagaacctttgcaa 242
Query: 61 gatgttacagacaggaagggagggcaagcagatcagcaattttattttaaatatgctata 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 gatgttacagacaggaagggagggcaagcagatcagcaattttattttaaatatgctata 302
Query: 121 tatgtttaattagtttcatagttaggatcactgtgagagaatgtgtctgggaaggcaacg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 tatgtttaattagtttcatagttaggatcactgtgagagaatgtgtctgggaaggcaacg 362
Query: 181 ggaatgttgattctctctctctctc---------c-ctctctctctctctct-------- 222
||||||||||||||||||||||||| | ||||||||||||||||
Sbjct: 363 ggaatgttgattctctctctctctctctctctctctctctctctctctctctttctctct 422
Query: 223 --ctctctctctctctgtgtgtgtgtgtgtgtatgtgtgtgtttaaaataagtttagttc 280
|||||||||||||| | |||||||||||| |||||||||||||||||||||||||||
Sbjct: 423 ccctctctctctctctctctgtgtgtgtgtg--tgtgtgtgtttaaaataagtttagttc 480
Query: 281 agaactgacaggcacatacagaccatggcttgagttgtaaagggtactttaaaaacaacg 340
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 481 agaactgacaggcacatacagaccatggcttgagttgtaaagggtactttgaaaacaacg 540
Query: 341 caggatgataccagacatatttctataaagtggggaaactagttaacacttcaccatgga 400
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 caggatgataccagacatatttctataaagtggggaaactagttaacacttcaccatgga 600
Query: 401 ggtggatttggctgaggaaattgttgtagaactggcatatttcagagtgttgttcgggaa 460
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ggtggatttggctgaggaaattgttgtagaactggcatatttcagagtgttgttcgggaa 660
Query: 461 ctagtttcagcatacgagctgttctgcagattctagaggacccaccgaaatcaggtttgg 520
||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 ctagtttcagcatacaaactgttctgcagattctagaggacccaccgaaatcaggtttgg 720
Query: 521 ctttacaagcttcttcagtttccctgaattaacatatgattgctacctaatgctaaaca 579
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ctttacaagcttcttcagtttccctgaattaacatatgattgctacctaatgctaaaca 779
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 78
Number of extensions: 11
Number of successful extensions: 11
Number of sequences better than 10.0: 1
Number of HSP's gapped: 8
Number of HSP's successfully gapped: 1
Length of query: 579
Length of database: 979
Length adjustment: 10
Effective length of query: 569
Effective length of database: 969
Effective search space: 551361
Effective search space used: 551361
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
