Query= MSMg01no052_l15.b1 MSMg01no052_l15.b1 CHROMAT_FILE:
MSMg01no052_l15.b1 PHD_FILE: MSMg01no052_l15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:53:25 2005
(640 letters)
>mm_chr4_130784941_130785980
Length = 1040
Score = 598 bits (309), Expect = e-175
Identities = 318/321 (99%)
Strand = Plus / Minus
Query: 5 gaattccaccaatgggccaggctcaaacgatggaaaggaagctttgcatagaagacagct 64
|||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 321 gaattccaccaatgggtcaggctcaaatgatggaaaggaagctttgcatagaagacagct 262
Query: 65 tttccttagccctttctcactgtggaaggggaaacaggtttctaaacaggtcatgattct 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tttccttagccctttctcactgtggaaggggaaacaggtttctaaacaggtcatgattct 202
Query: 125 tgcgtgcgctcgactggccaggaagaacgacgctgcaacaggatccttctgcacacgttt 184
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgcgcgcgctcgactggccaggaagaacgacgctgcaacaggatccttctgcacacgttt 142
Query: 185 attgggagagcttgattgtagaggcgaaaagacctcgagcccagaactggtgctgctttt 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 141 attgggagagcttgattgtagaggcgaaaagacctcgagcccagaactggtgctgctttt 82
Query: 245 ataggcctaggaggggcgtgtctcacacccggattggttatgcactaagcctcatttgca 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81 ataggcctaggaggggcgtgtctcacacccggattggttatgcactaagcctcatttgca 22
Query: 305 tgttcctcatctgattggcta 325
|||||||||||||||||||||
Sbjct: 21 tgttcctcatctgattggcta 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 640
Length of database: 1040
Length adjustment: 10
Effective length of query: 630
Effective length of database: 1030
Effective search space: 648900
Effective search space used: 648900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no052_l15.g1 MSMg01no052_l15.g1 CHROMAT_FILE:
MSMg01no052_l15.g1 PHD_FILE: MSMg01no052_l15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:53:26 2005
(580 letters)
>mm_chr4_130696974_130697954
Length = 981
Score = 1054 bits (545), Expect = 0.0
Identities = 575/587 (97%), Gaps = 7/587 (1%)
Strand = Plus / Plus
Query: 1 caatgatgcttgag-aatattgttgggacttcttaagggggtgggtctcagtgacagggc 59
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 195 caatgatgcttgagcaatattgttgggacttcttaagggggtgggtctcagtgacagggc 254
Query: 60 aaggtgaacagacaaggtcttttggggactg----ggggggg-acgacgacaaaatgtca 114
||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||
Sbjct: 255 aaggtgaacagacaaggtcttttggggactggagtgggggggaacgacgacaaaatgtca 314
Query: 115 tccagagagacagagtctcttctctctcagggaaatctgggactctaccgtgccccagca 174
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 tccagagagacagagtctcttctctctcagggaaatctgggactctaccgtgccccagca 374
Query: 175 aagagatgccatcggttttcacccccacccccctacgactgggattcaccaaagtttgga 234
|||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct: 375 aagagatgccatcggttttcacccccgcccccctacgactgggagtcaccaaagtttgga 434
Query: 235 aaattcaaaataaataaataaataaactcgaagggctggggatgcagctccagggctaac 294
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 aaattcaaaataaataaataaataaactcgaagggctggggatgcagctccagggctaac 494
Query: 295 gtattgactttgcatgcacaaagctttgtatttaatcacagcacgacaactactttatca 354
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 495 gtattgactttgcatgcacaaagctttgtatttaatcacagcacgataactactttatca 554
Query: 355 attaattagtgtaaaatgaattattcaattaatgtaaaaacttataacagcgttgaaagt 414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 attaattagtgtaaaatgaattattcaattaatgtaaaaacttataacagcgttgaaagt 614
Query: 415 cccagcagtgagggggggggg-cgggcagcacatacagtataggctatatctaaagctcc 473
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 615 cccagcagtgagggggggggggcgggcagcacatacagtataggctatatctaaagctcc 674
Query: 474 gacctttgctcctagggtccccttcctcgtccaggatcccagaggggaagcaaaaggaag 533
||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct: 675 gacctttgctcctagggtccccttcctcggccatgatcccagaggggaagcaaaaggaag 734
Query: 534 tgaacccctatatattcaccttttagccccttatcagctacggtccc 580
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 735 tgaacccctatatattcaccttttagccccttatcagctacggtccc 781
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 580
Length of database: 981
Length adjustment: 10
Effective length of query: 570
Effective length of database: 971
Effective search space: 553470
Effective search space used: 553470
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
