Query= MSMg01no052_p09.b1 MSMg01no052_p09.b1 CHROMAT_FILE:
MSMg01no052_p09.b1 PHD_FILE: MSMg01no052_p09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:53:44 2005
(241 letters)
>mm_chr4_151919118_151919761
Length = 644
Score = 439 bits (227), Expect = e-128
Identities = 238/243 (97%), Gaps = 3/243 (1%)
Strand = Plus / Minus
Query: 1 agtgaggtaatgtgtggttggggccgggcagga---ctccccaccatgctgccttgcgaa 57
||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||
Sbjct: 443 agtgaggtaatgtgtggttggggccaggcaggactcctccccaccatgctgccttgcgaa 384
Query: 58 gtcccttgcatccttcctggatgcgctctactgcagagcctgcctcttgcatctacatac 117
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 gtcccttgcatccttcctggatgcgctctactgcagagcctgcctcttgcatctacatac 324
Query: 118 catccctagccaaggaaccccatcctcacagaggacacccaagccaaggtgcacagcgga 177
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 catccctagccaaggaaccccatcctcacagaggacacccaagccaaggtgcacagcgga 264
Query: 178 ggcaacagtggagactgggtgggttaagagagtcagacggggctggggtcaggcacacag 237
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 263 ggcaacagtggagactgggtgggttaagagagtcagacggggctggggtgaggcacacag 204
Query: 238 aag 240
|||
Sbjct: 203 aag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 241
Length of database: 644
Length adjustment: 9
Effective length of query: 232
Effective length of database: 635
Effective search space: 147320
Effective search space used: 147320
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no052_p09.g1 MSMg01no052_p09.g1 CHROMAT_FILE:
MSMg01no052_p09.g1 PHD_FILE: MSMg01no052_p09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:53:44 2005
(285 letters)
>mm_chr4_151809233_151809916
Length = 684
Score = 468 bits (242), Expect = e-136
Identities = 266/274 (97%), Gaps = 1/274 (0%)
Strand = Plus / Plus
Query: 12 cccgaaattcccagaatatctaggctgttggggttctatccggccgtcatctttcaccat 71
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 212 cccg-aattcccagaatatctaggctgttggggttctatccggccgtcatctttcacgat 270
Query: 72 ggtgatgttactttgggcttcctttgccggctctgcagccagtggctcaccagcgccccc 131
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 ggtgatgttactttgggcttcctttgccggctctgcagccagtggctcaccagcgccccc 330
Query: 132 tacaggaggcctgttgttcagaaaggctggaccacacaaggcgatcaagattgccctgta 191
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 tacaggaggcctgttgttcagaaaggctggaccacacaaggcgatcaagattgccctgta 390
Query: 192 agtctggctgctgctggcctttggaaaatgggcaggtgccagtccccaaatgcctgtgag 251
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 agtctggctgttgctggcctttggaaaatgggcaggtgccagtccccaaatgcctgtgag 450
Query: 252 ctccttgagagcgttttcccagacgtctctgggt 285
|||||| |||||| ||||||| ||||||||||
Sbjct: 451 ctccttaagagcggcctcccagaggtctctgggt 484
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 285
Length of database: 684
Length adjustment: 9
Effective length of query: 276
Effective length of database: 675
Effective search space: 186300
Effective search space used: 186300
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
