BAC Information

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BAC

Clone NameMSMg01-053B10
Chromosome4 (Build37)
Map Location 55,739,589 - 55,739,836
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC384018, EG666920, Zfp462, LOC670211, Rad23b, LOC666953, LOC100041348, Klf4
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-053B10.T7 (MSMg01no053_b10.b1)MSMg01-053B10.TJ (MSMg01no053_b10.g1)
ACCAG281405AG281406
length703704
length of high quality
(start - end)
332 (72 - 403)250 (71 - 320)
definitionCHROMAT_FILE: MSMg01no053_b10.b1 PHD_FILE: MSMg01no053_b10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:53:54 2005CHROMAT_FILE: MSMg01no053_b10.g1 PHD_FILE: MSMg01no053_b10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:53:54 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTTTGTTCACCTGTGAGCCCCATTTTTAATGGTGTTATTTGAT
TTCATTGAGTCCACCTTCTTGATTATTTATGTATATTGGATATTAGTCCC
CTATATGATTTTAGATAGGTAAAGATCCTTTCCCAATTTGTTTGTGGCCT
TTTTTTCTTACTGTTGGTGTCTTTTGCATTGCAGAAGCTTTGAAATTTTA
TGGGGTCCCATTTGTTGATTCTAGATCTTACAGCACAATCCATTATTGTT
CTATTCAGGGATTTTCCCCCTGTGCCCATATATTCGAGGCTTTTTTTCTT
ACTTTCTCCTCTTCAAATTTCAGTGTCTCTGGTTTTATGTGGAGTTCCTT
AATCCACTTATATTTGACCTTAGTACAAGGAGATAGGAATGGATCAATTT
GCATTCTTCTACACGATAACTACCAGTTTTGCTTGCATCATTTGTTGAAA
ATGCCGTCTTTTTTCAATCGTATGGTTTTTGTTCCCTTGCCTAAGATCAA
GTGACCATAGGTGTGTGTATTCTTTTCTGTTTTTCCAATTCTATCTCTTG
GTCTACTTGCCTGTTCAATTACTAGCACCTGCCGTTTTTCACACCGCTGC
TCTCTAGCATATCTTCTCGCCACTTATGTTGCATCCCCTCTCACCTTTTT
TTT
NTTCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXTTTTCTGCGAAATTCAGCGTAGGGCCTGAGGACTTTGGGA
GTTTGTGGCAAGATTGAAAAAGAGGTCGCCTGTAGTCCTGGCAGAACTTC
AAATGTCAGCAGCGATTGTATGACTATTCATACACTCACCATGTAAAAAG
ACAGTAACACCATGGGTTGTGTGTTTCCGGTGTGATAGCGGCAGGTGAAT
CTTTTCCTCCTGCATTGCTCCCCTTCATTCACCCAATTCTCAGGGACATG
AAGTCATTTTGCAGGTGATTATACCCAAGACTTCAGGGTTATAAAACAAC
AGAGGCTGACTCTCCAAGCCTCCACATGCTTAACCCTCAGACCATAGCTG
GTTACAGCTAAGGTTCAACTATTCCGTGACAAGGGACAAAACCCACCAGT
AGCTTCTGCTCTGAGGTTTGGAGCTATACAGTCACTATGTTATCGACTCT
TTTCATTGCCATGATCAAACACTTGGAAAGGTGAATTTTTGGCCTGTTGT
TTCAGGGGGTGTCGTTTATCCCGACTTGCAATACTGCCATCCCCCTGTGT
TTATGGGATTCCTCACATCTCTATTGATTTGATTCCATTTTAACCATCCT
CCCTTTCCTCCTTTTGATCACCTCCTGGCCCCTGCAACAAGCTATGGTGA
TATC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no053_b10.g1 MSMg01no053_b10.g1 CHROMAT_FILE:
MSMg01no053_b10.g1 PHD_FILE: MSMg01no053_b10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:53:54 2005
         (250 letters)



>mm_chr4_55739389_55740038
          Length = 650

 Score =  480 bits (248), Expect = e-140
 Identities = 248/248 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   aattcagcgtagggcctgaggactttgggagtttgtggcaagattgaaaaagaggtcgcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aattcagcgtagggcctgaggactttgggagtttgtggcaagattgaaaaagaggtcgcc 260

                                                                       
Query: 61  tgtagtcctggcagaacttcaaatgtcagcagcgattgtatgactattcatacactcacc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgtagtcctggcagaacttcaaatgtcagcagcgattgtatgactattcatacactcacc 320

                                                                       
Query: 121 atgtaaaaagacagtaacaccatgggttgtgtgtttccggtgtgatagcggcaggtgaat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atgtaaaaagacagtaacaccatgggttgtgtgtttccggtgtgatagcggcaggtgaat 380

                                                                       
Query: 181 cttttcctcctgcattgctccccttcattcacccaattctcagggacatgaagtcatttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cttttcctcctgcattgctccccttcattcacccaattctcagggacatgaagtcatttt 440

                   
Query: 241 gcaggtga 248
           ||||||||
Sbjct: 441 gcaggtga 448


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 250
Length of database: 650
Length adjustment: 9
Effective length of query: 241
Effective length of database: 641
Effective search space:   154481
Effective search space used:   154481
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)