BAC Information

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BAC

Clone NameMSMg01-053E08
Chromosome4 (Build37)
Map Location 84,666,228 - 84,666,692
singlet/doubletsinglet
Overlap geneD530005L17Rik
Upstream geneLOC668010, Bnc2, LOC100040660, LOC624465, LOC100040284, LOC622811
Downstream geneLOC100040303, Sh3gl2, A930009N24, LOC668052
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-053E08.T7 (MSMg01no053_e08.b1)MSMg01-053E08.TJ (MSMg01no053_e08.g1)
ACCAG281530AG281531
length698698
length of high quality
(start - end)
135 (181 - 315)465 (72 - 536)
definitionCHROMAT_FILE: MSMg01no053_e08.b1 PHD_FILE: MSMg01no053_e08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:54:08 2005CHROMAT_FILE: MSMg01no053_e08.g1 PHD_FILE: MSMg01no053_e08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:54:08 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTCACCAGAGCCCACCGAATGGGAGAGAAGCACTTGAAAAATGTTCAA
CATCCTTAATCATCAAGGAAATGCAAATCAAAACAACCCTGAGATTCCAC
CTCACACCAGTCAGAATGGCTAAGATCAAAATTCAGGTGACAGCAGATGC
TGGCGAGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGGGAGTG
CAGGCTTGTACAACCACTCTGGAAATCAGTCTGGTGGCTCCTCAGAAAAC
TGGACATAGTACTACCGTATGATCCAGCAATACCTCTCCTGGGCATATAT
CCAGAAGATGCCCCAACACGTAAGAAGGACTCATGCTCCACTATGTTCAT
AGCAGCCTTATTTATAATAGCCAGAAGCTGGATTGAACCTAGATGCCCCT
CAACAGATCAATGGATACTGAAAATGTGGCATATCCACACAATGGAGCAC
TACTCACCTATTAACACGAACGACTTTATGATATTCCTATCCCATTGTAT
GGACCTGTAGGGCATCCTCCCGAATGAGGGATCCTTTTCCTCATAGAAAC
TCCCCCAATATGGTATTCTCTGATACATGGATATAATCCCCAAAACTAGG
ATACCCAAGATATATCATACCCCTTGCTACACCTTTCGTTCCCTTTTA
AATATAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCCTAACAGAATAGGAAGGGATTGTCTAGT
GAGAACCAGGTTAGGCCAGATTAGGCCAGGTAATGGATTGTGGGACTTGT
GCTAGATCTGGTGGGTTGGGAAGAAGTTATGGGTGGGAGAGGCCAGGAAA
ATCATGAGTTTTGACTATGGAGAAGGAGGTAGGAACTCCTTCTAAGTGGA
AGACTTGGATGTGGCATGTAAGGGACTCTGGGCAGTTGCAGATAAGATGG
TTCTTGGTGGACTCCTACAGATTGACTGTCCAGTGCAAAAGGGGGTTGGT
CAGGAATATTTAATACTTCTATGGCATAAAAATGTAAAGACTTGAACATT
TCCTCTTTATGTATTTTCTGTATATGTCATTTCATATAAATTTATGACAT
ATAGCTACCTGTTACTCTATTTTAACAAGAAACCAGTAACGTATAAATGG
TGAAATTGACTGCCTTCTTCAGTATTTATCTATCAGGCATTTATCTAGAC
ATTCATAGAGCTAATATTTACCAGTGTAATTCAGAAACTAGGCACTAACC
TAGAGACTGAATATCCAATGGTTTTATCAAGAGTAATTGTTTCCAAGCCT
GGGGTTATTATATTAGGTACACCTATGTCCCAGGGGAGCTCAAGTCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no053_e08.g1 MSMg01no053_e08.g1 CHROMAT_FILE:
MSMg01no053_e08.g1 PHD_FILE: MSMg01no053_e08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:54:08 2005
         (465 letters)



>mm_chr4_84666028_84666892
          Length = 865

 Score =  884 bits (457), Expect = 0.0
 Identities = 463/465 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cctaacagaataggaagggattgtctagtgagaaccaggttaggccagattaggccaggt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cctaacagaataggaagggattgtctagtgagaaccaggttaggccagattaggccaggt 260

                                                                       
Query: 61  aatggattgtgggacttgtgctagatctggtgggttgggaagaagttatgggtgggagag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aatggattgtgggacttgtgctagatctggtgggttgggaagaagttatgggtgggagag 320

                                                                       
Query: 121 gccaggaaaatcatgagttttgactatggagaaggaggtaggaactccttctaagtggaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gccaggaaaatcatgagttttgactatggagaaggaggtaggaactccttctaagtggaa 380

                                                                       
Query: 181 gacttggatgtggcatgtaagggactctgggcagttgcagataagatggttcttggtgga 240
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gacttggatgtggcttgtaagggactctgggcagttgcagataagatggttcttggtgga 440

                                                                       
Query: 241 ctcctacagattgactgtccagtgcaaaagggggttggtcaggaatatttaatacttcta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctcctacagattgactgtccagtgcaaaagggggttggtcaggaatatttaatacttcta 500

                                                                       
Query: 301 tggcataaaaatgtaaagacttgaacatttcctctttatgtattttctgtatatgtcatt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tggcataaaaatgtaaagacttgaacatttcctctttatgtattttctgtatatgtcatt 560

                                                                       
Query: 361 tcatataaatttatgacatatagctacctgttactctattttaacaagaaaccagtaacg 420
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 561 tcatataaatttatgacatatagctacttgttactctattttaacaagaaaccagtaacg 620

                                                        
Query: 421 tataaatggtgaaattgactgccttcttcagtatttatctatcag 465
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tataaatggtgaaattgactgccttcttcagtatttatctatcag 665


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 465
Length of database: 865
Length adjustment: 10
Effective length of query: 455
Effective length of database: 855
Effective search space:   389025
Effective search space used:   389025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)