BAC Information

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BAC

Clone NameMSMg01-053E10
Chromosome4 (Build37)
Map Location 120,374,156 - 120,374,297
singlet/doubletsinglet
Overlap geneKcnq4
Upstream geneHivep3, Edn2, Foxo6, Scmh1, Slfnl1, Ctps, EG667063, Cited4
Downstream geneNfyc, Rims3, LOC626489, 3110037I16Rik, Zfp69, Smap1l, Col9a2, Zmpste24, Tmco2, LOC100042174, Rlf, OTTMUSG00000008911, EG666914, LOC666921, LOC666927
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-053E10.T7 (MSMg01no053_e10.b1)MSMg01-053E10.TJ (MSMg01no053_e10.g1)
ACCAG281534AG281535
length706702
length of high quality
(start - end)
141 (77 - 217)221 (80 - 300)
definitionCHROMAT_FILE: MSMg01no053_e10.b1 PHD_FILE: MSMg01no053_e10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:54:08 2005CHROMAT_FILE: MSMg01no053_e10.g1 PHD_FILE: MSMg01no053_e10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:54:08 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAAATCCGCGGAA
TTCAAGGTCGACTTCGGCTGCATTGACAGTTTGAGGCTCTCTGAGCTACC
AACCTCCTGCTTCAAAAACAGAAAGGAAAAAAAGTATGAGACTAAATGTC
TCATACTAAGGGTGACTATGCTTATGAAACGTGTGTGTTTAACCTGTGTG
TATGAATGAGTACTGGTTTGCAGGATAAGATGTATTTCTTATGTCTTGGT
GAAACAGTTTTGAGAGCCATGATATATTATTGGCTGCTGTGATAATTAAG
TAGGTGCTGGTCTCCTATGCTCTGTACCCATGCCCAGTGTGTATTTGTCC
CCAGCTTCCTGGTTAGTAGCCCTGGCTGTATCTCTTCTTTCAGCTTGTAG
CTCTGTTGCCCGAGGCCCCCGACGCTCATTCTCCTTGATTCTGTTCCCTG
GCTCTTGGATCTTGCCTTCTCACCTGTATTCTTTTCTGATATCATCCCGT
TTCGTTCCTTCCTTCCTTCCCTCCCTTCCTGTTTCCCCTTTCTTTGTATA
TTTCCTTTTGTATTTCCTAATTCCTTCTAATCTCTTTTTTCCTTCTTTTA
CGTTCCCTTTCTTATCTTTTTGTCCTTCACATTGTCCCCTTTGCCTTTCT
TCCCTTTTCCTTTTTTTTTTTTTCTCCCTCCTCTTTCCTCTCTTGTTTTT
TTTTTT
CGATGAAGTGGGAGGCCTGGCGGCGCCTGGTTTCGTATTGAGGTGAACTA
TAGAAGGTTACANGATTACTCGGGATCCCAAATTCCTGGGCTACCCACTG
TTCTTTTACTCTCCTTTTCCCCCTCCCCTCCTTCCTTCCTGACTCCTTTC
TTCTCTCCTCCCCGCTCCTTCCCTCGCCTTTCTGTTCTTTCCTTTTACTT
TTCTTCAAGATTGTTTTTCCTTTACACAGGGTCTACCTATACCACCCATG
TGCCCTATCTTCCCACAGGAGCCTCCTTGGGTAGGTTTATTAGCCTTTGT
GGAGGCTTGAATTTACTCGTTCTCCATAGACCCATGGGGATAGCATTATT
AGTAAGTGTGGCCCTGCCGGATTGGCGTGGTCTTGTACAAAGAATTGCTT
CATTGAGGCGTGGGTTTTGTTTATTCTATAAGCTCACGTCCGGCACAGTC
AGTCTCATTTCTTTCCCACTCCCTTTCCCCCTCCTCTCCTCTTCCACATT
ATTTTTTAACTTTCTTCACTCTTTTTCCCCTTCTCTCATTCTTCCCTTTT
CCAATATTCACTCTTTATTTTTATCCCCCCCTTTCTCCATTTTTCTTTCT
TTTTTTCATATTTTCTCCTTCATCATACTCCCCCTTCCCCCCTCCTTTTC
TTTTCTTCCTTCTTTCTTTTTTTTCTCTTCCTTTTTCCCTTTTCTATTTT
TT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no053_e10.b1 MSMg01no053_e10.b1 CHROMAT_FILE:
MSMg01no053_e10.b1 PHD_FILE: MSMg01no053_e10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:54:08 2005
         (141 letters)



>mm_chr4_120373956_120374497
          Length = 542

 Score =  267 bits (138), Expect = 2e-76
 Identities = 141/142 (99%), Gaps = 1/142 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   cagtttgaggctctctgagctaccaacctcctgcttc-aaaaacagaaaggaaaaaaagt 59
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 342 cagtttgaggctctctgagctaccaacctcctgcttcaaaaaacagaaaggaaaaaaagt 283

                                                                       
Query: 60  atgagactaaatgtctcatactaagggtgactatgcttatgaaacgtgtgtgtttaacct 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 atgagactaaatgtctcatactaagggtgactatgcttatgaaacgtgtgtgtttaacct 223

                                 
Query: 120 gtgtgtatgaatgagtactggt 141
           ||||||||||||||||||||||
Sbjct: 222 gtgtgtatgaatgagtactggt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 141
Length of database: 542
Length adjustment: 8
Effective length of query: 133
Effective length of database: 534
Effective search space:    71022
Effective search space used:    71022
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)