BAC Information

Click to search

BAC

Clone NameMSMg01-053O08
Chromosome4 (Build37)
Map Location 44,324,794 - 44,325,185
singlet/doubletsinglet
Overlap geneMelk
Upstream gene4930417M19Rik, Rusc2, 4833436C18Rik, Tesk1, Cd72, Sit1, Rmrp, LOC622404, E130306D19Rik, Car9, Tpm2, Tln1, Creb3, Gba2, 1110029E03Rik, LOC100039672, LOC100040179, Npr2, Spag8, Hint2, Serf2-ps, 4930412F15Rik, Olfr70, Olfr71, LOC100039781, 5430416O09Rik, A630077J23Rik, GA_x5J8B7W5BNN-892919-892147, Olfr159, Olfr29-ps1, Olfr156, LOC100040268, Olfr155, Reck, Glipr2, Ccin, Clta, Gne, LOC100040313, OTTMUSG00000007209, Rnf38
Downstream genePax5, 5730488B01Rik, LOC545618, Zcchc7, D4Wsu132e, Grhpr, Zbtb5, 1700055D18Rik, Polr1e, Fbxo10, 1110019J04Rik, Frmpd1, Rg9mtd3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-053O08.T7 (MSMg01no053_o08.b1)MSMg01-053O08.TJ (MSMg01no053_o08.g1)
ACCAG281982AG281983
length702692
length of high quality
(start - end)
329 (48 - 376)392 (77 - 468)
definitionCHROMAT_FILE: MSMg01no053_o08.b1 PHD_FILE: MSMg01no053_o08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:54:56 2005CHROMAT_FILE: MSMg01no053_o08.g1 PHD_FILE: MSMg01no053_o08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:54:56 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NATTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTATCAGACTTCCAAGAAGACCTATTACCAATTCTCTTCAACAA
TTCCACAAAATAGAAACAGAAGGAACACTATCTAATTCGTTCTATGAAGC
CACGATTACGCTTATCAGTAAACTACACAAAGACCCAACAAAGAAAGAGA
ACTTCAGACAAATTTCCCTGATAAGTATCAATGGAAAAATACTCAATAAA
ATTCTTGAAAACTGGGCCTGGTGTGGTGGCGCATGCCTTTAATCCCAGCA
CCTGGGAGGCAGAGGCAGGTGGATTTCTGAGTTCCAGGCGAGCCTAGTCT
ATAGAGTGAGTTCCCAGGACAGCCAAGGCTACACAGAGAAACCTTGTCTC
AAACAAACAAACAAACAAACAAACAAACAAACAAAACAAAAACTAAACAA
AACAAAAAATCAACTTAACAAACAAACCAACAAATCTCAAAAACTGATTC
CAAGAACACATCCAAACAACCATCCATCATTATCAAGTCAGCTTTATCCC
AGGAATGCCGGGATGGCTCAATATATGTAAATCAATCAACATAATTCACT
ATATAAACAAACTCCAAGGAAAAAAAACCCCTCACCATCTCCATTGATAT
CTGAGAAAAAGATTTGACAAAGCCCAACACCTCTCCCATGGTTAAAAGTC
AG
CACGATACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTCACTTTGGGGGATAGTTTTTCA
TCTATACTCTCTTTGAGTTCAAAGGGGAGAATTTATTAAAGTTTAATGCT
TTTAATGTTTATTTTTGTTTTCTGAGACTGGTCTCATGTGGCTGAGTCTG
ACCTTGAACTCCTGATCTTGCTGCTTCTGGCCAAGTGCAGGGATTACAAA
TGTGCAGGAGCTGAGACTCACTGTTCCTAGGGCCATAACTACAAGTGTTT
GGTTTTTGTGTTACGCAGGGCAACAAGGACTACCATCTGCAGACGTGCTG
TGGGAGCCTTGCTTATGCAGCTCCTGAACTAATACAAGGGAAGTCGTACC
TTGGATCGGAGGTAATTGTTACTGATTAGTCGGATGTGTCTCTTCATCCT
CATTGTGCTGGCTTTTGTATAAAGTGTCTATAGTTTGAATTGGTTAGGTC
AGCTAGGAAGGTTCCAAGGCGATGGTGTTGCGCCCTAGTTTCCTAGATGT
TTATCATTTACCACTGATAAAAACTTATCCTTCTAACTTAGCTGACTTGT
TTCTTTTTTTTGTTTGCTTGGTTTTGTTTTCCGTCTTTTTCTTTGAGCCG
GGTTTTTCTTTTTTCCCCCTCGTTTTTCCCGTACCTTGCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no053_o08.g1 MSMg01no053_o08.g1 CHROMAT_FILE:
MSMg01no053_o08.g1 PHD_FILE: MSMg01no053_o08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:54:56 2005
         (392 letters)



>mm_chr4_44324594_44325385
          Length = 792

 Score =  719 bits (372), Expect = 0.0
 Identities = 387/392 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctcactttgggggatagtttttcatctatactctctttgagttcaaaggggagaatttat 60
           |||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 201 ctcactttgggggataatttttcatctatcctctctttgagttcaaaggggagaatttat 260

                                                                       
Query: 61  taaagtttaatgcttttaatgtttatttttgttttctgagactggtctcatgtggctgag 120
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 261 taaagtttaatgcttttaatgtttatgtttgttttctgagactggtctcatgtggctgag 320

                                                                       
Query: 121 tctgaccttgaactcctgatcttgctgcttctggccaagtgcagggattacaaatgtgca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tctgaccttgaactcctgatcttgctgcttctggccaagtgcagggattacaaatgtgca 380

                                                                       
Query: 181 ggagctgagactcactgttcctagggccataactacaagtgtttggtttttgtgttacgc 240
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggagctgagactcactgttcctggggccataactacaagtgtttggtttttgtgttacgc 440

                                                                       
Query: 241 agggcaacaaggactaccatctgcagacgtgctgtgggagccttgcttatgcagctcctg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agggcaacaaggactaccatctgcagacgtgctgtgggagccttgcttatgcagctcctg 500

                                                                       
Query: 301 aactaatacaagggaagtcgtaccttggatcggaggtaattgttactgattagtcggatg 360
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 501 aactaatacaagggaagtcgtaccttggatcagaggtaattgttactgattagtcggatg 560

                                           
Query: 361 tgtctcttcatcctcattgtgctggcttttgt 392
           ||||||||||||||||||||||||||||||||
Sbjct: 561 tgtctcttcatcctcattgtgctggcttttgt 592


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 392
Length of database: 792
Length adjustment: 9
Effective length of query: 383
Effective length of database: 783
Effective search space:   299889
Effective search space used:   299889
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)