BAC Information

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BAC

Clone NameMSMg01-054J01
Chromosome4 (Build37)
Map Location 75,261,899 - 75,262,361
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039814, LOC636847, 3110001D03Rik, LOC623529, LOC100039833
Downstream geneLOC100039884, LOC667845, Ptprd
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-054J01.T7 (MSMg01no054_j01.b1)MSMg01-054J01.TJ (MSMg01no054_j01.g1)
ACCAG282468AG282469
length766706
length of high quality
(start - end)
455 (129 - 583)496 (76 - 571)
definitionCHROMAT_FILE: MSMg01no054_j01.b1 PHD_FILE: MSMg01no054_j01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:55:46 2005CHROMAT_FILE: MSMg01no054_j01.g1 PHD_FILE: MSMg01no054_j01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:55:47 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTTTTTTTTTNNNNNNNNNNNNCCCGATCCCCCNATATCCCCCCTTTTCT
CCCCGTCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGG
ATCCGCGGAATTCAGTCTAGTTCTGGGATGGTTCACATCTGGTCAGAGCA
CAAGTCTGCTTAAAGTTGGATGAATGAACACTTGGCTCTCCAGCACTGCA
CTGAAATGGGAACAGCCTGACCACATTCCCAGCCCAGCCAGAGCTGATAT
ACAATCTTGTCATATTCATTAGTTTCAATCTTTCTTCCTCTAGATAAGAT
CTAATAAGGGATTTGAATTTTCCATCTTCTTCTCCCTTTAGTAGACCTCT
GATGGGGCTATTAATGAGTGTGAAATGGCCAGAGGGCAGGCAGCCTTAAA
GAACAATAGATGAAACAGATGGCAAAACGAACTGGATAAGGCCATTTAAT
ATCCACTCATCGTGATGATTAAACATTCGGGAGGTGGATTTTCTGCACAT
TAACTTGGCAGTACAATGAGAGCCACAGCCTTTCTGCAGTTCAGTTTCAA
CACATGTAGAATATGGAGCTTGGACTAATGTAGCAGTTATTACAAGTGCT
CAGACGAGCCCTAGGATCCTTACGTAACCTTTAAAACGATTTGAAGTAAT
AAGAGGCAGGTGAACGCCTCTCCTCTAACAAAATCACACTACATTTTGAA
TGTATATTCTTCTGTGGCAGTGCTACAGTCATTTTAATTTCTGTAACAGA
GGTTAATAAAAAAACC
GATTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTATTGAGTATTTTTGCATTGATATT
CATATGGGAAATTAGTTTGAAGTCCTCTATCTTTGTTGGATTTTTCTGTG
ATTTAGGTATCAGAGTAATTGTGGCTTCATAGAATGACTTGGGTAGAGTA
CCTTCTAGTTCTATTTGGGGGAATAGTTTGTGGAGAACTAGAATTAGATC
TTATTTGAAGGTCTGATAGAACTCTGCACTAACCTATCTGGTCTAGGCTT
TTTTTGGTTGGGAAACTATTAATGCCTGCTTCTATTTCTTTTTTTTTCTT
TTCTTTTCTTTTTTTAAATATTTTATTATTAGGTATTTTCCTCATTTACA
TTTCCAATACTATCCCAAAAGTCCCCCATACCTTTCTGCCAATTCCCTAC
CCACCAACTCCCACTTTTTGGCCCTGGTTTTACCCTGTACTGGGGCATAT
ACCGTTTGCAAGTCCAATGGGCCTCTCTTTCCAGTGATGGTCGACTAGGC
CATCTTTTGATACATATGCAGCTAGAGTCAAGAGCTCCAGGGTAATGGCT
AGCTCATAATGTTGTTCCACCTATTGGGTTGCAGATCCCTTTAGCTCCTT
GTGTACTTTCTCTAGCTCCTCCATTGGGGGCACTGTGATCCATCCATAAC
TTGATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no054_j01.b1 MSMg01no054_j01.b1 CHROMAT_FILE:
MSMg01no054_j01.b1 PHD_FILE: MSMg01no054_j01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:55:46 2005
         (455 letters)



>mm_chr4_75261859_75262713
          Length = 855

 Score =  845 bits (437), Expect = 0.0
 Identities = 453/463 (97%), Gaps = 8/463 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   tggttcacatctggtcagagcacaagtctgcttaaagttggatgaatgaacacttggctc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 tggttcacatctggtcagagcacaagtctgcttaaagttggatgaatgaacacttggctc 444

                                                                       
Query: 61  tccagcactgcactgaaatgggaacagcctgaccacattcccagcccagccagagctgat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 tccagcactgcactgaaatgggaacagcctgaccacattcccagcccagccagagctgat 384

                                                                       
Query: 121 atacaatcttgtcatattcattagtttcaatctttcttcctctagataagatctaataag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 atacaatcttgtcatattcattagtttcaatctttcttcctctagataagatctaataag 324

                                                                       
Query: 181 ggatttgaattttccatcttcttctccctttagtagacctctgatggggctattaatgag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 ggatttgaattttccatcttcttctccctttagtagacctctgatggggctattaatgag 264

                                                                       
Query: 241 tgtgaaatggccagagggcaggcagccttaaagaacaatagatgaaacagatggcaaaac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 tgtgaaatggccagagggcaggcagccttaaagaacaatagatgaaacagatggcaaaac 204

                                                                       
Query: 301 g--------aactggataaggccatttaatatccactcatcgtgatgattaaacattcgg 352
           |        |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 203 gaatccacaaactggataaggccatttaatatccactcatcatgatgattaaacattcgg 144

                                                                       
Query: 353 gaggtggattttctgcacattaacttggcagtacaatgagagccacagcctttctgcagt 412
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 143 gaggtggattttctgcacattaacttgacagtacaatgagagccacagcctttctgcagt 84

                                                      
Query: 413 tcagtttcaacacatgtagaatatggagcttggactaatgtag 455
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 83  tcagtttcaacacatgtagaatatggagcttggactaatgtag 41


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 455
Length of database: 855
Length adjustment: 10
Effective length of query: 445
Effective length of database: 845
Effective search space:   376025
Effective search space used:   376025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)