BAC Information

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BAC

Clone NameMSMg01-054P07
Chromosome4 (Build37)
Map Location 32,910,042 - 32,910,334
singlet/doubletsinglet
Overlap geneAnkrd6
Upstream geneMap3k7, LOC665218, LOC665228, LOC665232, Bach2, Gja10, Casp8ap2, Mdn1, Lyrm2
Downstream geneLOC665298, Rragd, 4933421O10Rik, Ube2j1, LOC100039142, Gabrr2, Gabrr1, Acy1l2, Srrp, Pnrc1, Rngtt
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-054P07.T7 (MSMg01no054_p07.b1)MSMg01-054P07.TJ (MSMg01no054_p07.g1)
ACCAG282755AG282756
length768731
length of high quality
(start - end)
370 (99 - 468)287 (76 - 362)
definitionCHROMAT_FILE: MSMg01no054_p07.b1 PHD_FILE: MSMg01no054_p07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:56:15 2005CHROMAT_FILE: MSMg01no054_p07.g1 PHD_FILE: MSMg01no054_p07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:56:15 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTATTTTTTTAAAAAAAAANACCATCCAACAAAAATCCCGTGTACCACG
AATACTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTAAAGAGGAT
CCGCGGAATTCCATGTCTCCCCCAGCACCAAGTCGGCCTGCATGCTATCA
TGCTTCCCACCATAGTGATAATGGACTGAATCTCTGAAACTGTAAGCCAT
CCCCAATTAAATGTGGTCTTTTATAAGAATTGCCTTAGTCATGGCGCCTG
TTCACAGCAATAAACCCTAAGACACAGCTGCATCACCAAAACCCCACCCC
AGCGTGTGACAGCTGACAACGTCACAACTCTGTAGCTCACTGTGAAACTT
GCAGGCAGCTCAACTGACGGTAAACCGTCTCTTCTAGGCTCTGGTGATCT
GAGTCTTCCATACAGCTCACCTGGTTGCTGCCTCTTCTAGGCTGCTCTAC
TTATCTGTTTTCTTGGCACCCCACCTAGACTGAGAGCATCTCTTGGTTGG
CCTTACTGACTCTGTAAGCTTGAGGATGGAGGGGCCTAATATATCCGGTC
AGCTTCAGGGACTTCTTGAAACCGCTGGCTCGTTTACTTCCTGAACTGAA
CCTTGCTTACCTGAACCATGGATAGATTGACCTCCCTTTAGAGCGTTCTG
CCTAATCAGCTTCCCTCCAAACATTTCCCCGCTGCCCTGAAAAAAACTCT
TATGCCCCCCCAACAACAAATTTAATGAGTGCAAACACCCACCCACCCGA
ATTAACCTTTAATTCCAN
CAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCTGAGGCACCTGTTGCCCTGGCTTC
TTTTCTATATCACACTCCTTCTTGTAGGTTTTCTTGGTAAAATCCCAGTG
TAAGCAAAAGGCACGGCAAGCTCTCCCCAAAATGCTCACTCTGTAACTGT
GGTCACATGCACTGGATTGGTAAAGATGCAGGTCCGAGGATGGAGGCGGC
CAGGTAAGCCAGGGCCACTGTAACAATGGGATGCTCACATGGAACAGTGC
TGGTGGAGTCCCAGACAAGTCTTAAGGCAACACTTCCCGGCAGCCCCTAC
CCCATTAGGCTGCCCTTGTGCCGACAGTGCCGTGGCATGAATAGGTGCAC
GCACTGACCTGGTTCCCCCCATGGACGGACCATAAAGCATTGAGGAGTAG
TCTGATGACGGATAAGTGGTTATACCGCGCAGCCACGTGTATACAGGTGT
CCCCTGCCTGTGGACAGAACGCCCAACTTCTGCAGTCACAAAATAACATT
TATTAACCATCTCTACAACGGTCATCACTTAAAGAGCTGGAAAGACAACC
TGTTTGTCCTAGGTTAACGTGAAACCTGAACTTATACACTCAGTCCTAAA
AACATAAGCTGCTTCCAAATCCCAAAAAATCTTTTGCTTTTTTGTTGCAT
TATAAAAACTTATATTTGACTTATTTTTCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no054_p07.g1 MSMg01no054_p07.g1 CHROMAT_FILE:
MSMg01no054_p07.g1 PHD_FILE: MSMg01no054_p07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:56:15 2005
         (287 letters)



>mm_chr4_32909842_32910534
          Length = 693

 Score =  478 bits (247), Expect = e-139
 Identities = 279/293 (95%), Gaps = 6/293 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctgaggcacctgttgccctggcttcttttctatatcacactccttcttgtaggttttctt 60
           |||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||
Sbjct: 201 ctgaggcacctgttgccctggcttcttttctataccacactcctttttgtaggttttctt 260

                                                                       
Query: 61  ggtaaaatcccagtgtaagcaaaaggcacggcaagctctccccaaaatgctcactctgta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggtaaaatcccagtgtaagcaaaaggcacggcaagctctccccaaaatgctcactctgta 320

                                                                       
Query: 121 actgtggtcacatgcactggattggtaaagatgcaggtccgaggatggaggcggccaggt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 actgtggtcacatgcactggattggtaaagatgcaggtccgaggatggaggcggccaggt 380

                                                                       
Query: 181 aagccagggccactgtaac------aatgggatgctcacatggaacagtgctggtggagt 234
           |||||||||||||||||||      ||||| |||| |||| |||||||||||||||| ||
Sbjct: 381 aagccagggccactgtaactgtaacaatggaatgcccacacggaacagtgctggtggggt 440

                                                                
Query: 235 cccagacaagtcttaaggcaacacttcccggcagcccctaccccattaggctg 287
           ||||||||||||  |||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cccagacaagtcggaaggcaacacttcccggcagcccctaccccattaggctg 493


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 693
Length adjustment: 9
Effective length of query: 278
Effective length of database: 684
Effective search space:   190152
Effective search space used:   190152
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)