BAC Information

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BAC

Clone NameMSMg01-055G21
Chromosome4 (Build37)
Map Location 15,832,969 - 15,995,307
singlet/doubletdoublet
Overlap geneCalb1, Decr1, Nbn, Osgin2
Upstream geneTmem55a, OTTMUSG00000004551, Efcbp1, Tmem64, LOC100040095, LOC633695
Downstream geneRipk2, LOC667150, LOC383994, LOC100040154, LOC667212
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-055G21.T7 (MSMg01no055_g21.b1)MSMg01-055G21.TJ (MSMg01no055_g21.g1)
ACCAG283104AG283105
length694757
length of high quality
(start - end)
244 (70 - 313)398 (76 - 473)
definitionCHROMAT_FILE: MSMg01no055_g21.b1 PHD_FILE: MSMg01no055_g21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:56:50 2005CHROMAT_FILE: MSMg01no055_g21.g1 PHD_FILE: MSMg01no055_g21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:56:50 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(15,995,064 - 15,995,307)(15,832,969 - 15,833,366)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCACACAGTCTCAAGAGACTTTCATGGACTTTAAAGAGAACTATATT
TTAGCGTCAGCATGTTGAACTCCGACCCTTGCAATTTTGATATCCTTTAG
TTACCATACATACAGCATCTTTGTGTCTTGTCTTCTATCTACCCCTTTTG
ATTTACTTGAATCTTCTGCAATAGACTTAAGGGTTCCGATTTTTCTCTCA
TCTTTCCTTTTAACCTTTGGAAAAATCTAGTCATGCTTATCTTGGAATGA
AATCTTATTTTACCAAACTAAACCCTTCAGTCTTAAAAAACTATTTTCTT
TTCTTTTTAATTTGCCTTACCGAACAAACCCAAAATGCATCTGCTTATAT
TCTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTAT
TTATTTATTTATTTACTTAAAGACAGGGTTTCTTTGTATAACCCTGGCTA
TCCTGGAACTCACTCTGTAGACCAGGCTGGCCTCGAACTCATAAACGCAC
CTGCCTCTGCCTCCCAAGTGCTGGCATTAAAGGCGTGCGCCACCACTGCC
CAGCTTTATATTCTTATATTGTCCCCTCTATCTAACTTTCCTACCCAGTG
GTTCCTCTTTGTTTTATTTCTCCCCTTAATGTAATAAGACACTT
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCAGATGAGTTGAAGACAGTAACAGA
AGAGAAATACTAGTGTAATCATTTATCTTATTAGCAAATGATATTCTAAA
ACCTTCACTGACCCACATGTAACTCTGTTTCGTGTATCCTTTAGCTAGTG
TGTCTTCTGCTGGTTATTGGTGACAAAAATCTAATTAATTGCCTGGATTC
TTTATTGTGAAGCAAGATACAATGACAAAGTCTATGAAATTTATAGTTAT
CACCTAATGCAGGTTTGGGTCAGGTTGGATTTAAGCACTTTTTTTCAATT
GTTGTTCATAAAAATAACAACAAAACCAAGTATGGACTCTTTCCCTCAAG
AATGAATATAAAAGGAATCTGTCACACACAAAAACAAACAAATAAATAAC
AACAGAAACCCACTATATCCCAGGATGGGGAGAAGTGATACACTGGCTTT
ACTTCGGCACTTATTTGGAAGCAGTGACTTTAGACTGAATTTAACTACCA
AGAATAAAGGAAATTACATTACTCTTTCATATTTGTTTCTACCCCAAAGC
GCTAATTGTCATGTAATCTGTTATCAATTAGGTTACAAAAGTATATATCG
TGAATCATTATAGCCGACAGACTCTAATAAAAATTTTGCTCAGTGAATGA
CTTACAGGTATGAGCATTCCTAAAGATTACCCAACCATACATCCTATAAT
ATTCATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no055_g21.b1 MSMg01no055_g21.b1 CHROMAT_FILE:
MSMg01no055_g21.b1 PHD_FILE: MSMg01no055_g21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:56:50 2005
         (244 letters)



>mm_chr4_15994864_15995507
          Length = 644

 Score =  433 bits (224), Expect = e-126
 Identities = 239/244 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   gactttcatggactttaaagagaactatattttagcgtcagcatgttgaactccgaccct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||
Sbjct: 444 gactttcatggactttaaagagaactatattttagcgtcagcatgttgaactttgaccct 385

                                                                       
Query: 61  tgcaattttgatatcctttagttaccatacatacagcatctttgtgtcttgtcttctatc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tgcaattttgatatcctttagttaccatacatacagcatctttgtgtcttgtcttctatc 325

                                                                       
Query: 121 taccccttttgatttacttgaatcttctgcaatagacttaagggttccgatttttctctc 180
           ||||| |||||||||||||||||||||||||||||| |||||||||| ||||||||||||
Sbjct: 324 taccctttttgatttacttgaatcttctgcaatagagttaagggttctgatttttctctc 265

                                                                       
Query: 181 atctttccttttaacctttggaaaaatctagtcatgcttatcttggaatgaaatcttatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 atctttccttttaacctttggaaaaatctagtcatgcttatcttggaatgaaatcttatt 205

               
Query: 241 ttac 244
           ||||
Sbjct: 204 ttac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space:   149225
Effective search space used:   149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no055_g21.g1 MSMg01no055_g21.g1 CHROMAT_FILE:
MSMg01no055_g21.g1 PHD_FILE: MSMg01no055_g21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:56:50 2005
         (398 letters)



>mm_chr4_15832769_15833566
          Length = 798

 Score =  762 bits (394), Expect = 0.0
 Identities = 397/398 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagatgagttgaagacagtaacagaagagaaatactagtgtaatcatttatcttattagc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cagatgagttgaagacagtaacagaagagaaatactagtgtaatcatttatcttattagc 260

                                                                       
Query: 61  aaatgatattctaaaaccttcactgacccacatgtaactctgtttcgtgtatcctttagc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaatgatattctaaaaccttcactgacccacatgtaactctgtttcgtgtatcctttagc 320

                                                                       
Query: 121 tagtgtgtcttctgctggttattggtgacaaaaatctaattaattgcctggattctttat 180
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tagtgtgtcctctgctggttattggtgacaaaaatctaattaattgcctggattctttat 380

                                                                       
Query: 181 tgtgaagcaagatacaatgacaaagtctatgaaatttatagttatcacctaatgcaggtt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgtgaagcaagatacaatgacaaagtctatgaaatttatagttatcacctaatgcaggtt 440

                                                                       
Query: 241 tgggtcaggttggatttaagcactttttttcaattgttgttcataaaaataacaacaaaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgggtcaggttggatttaagcactttttttcaattgttgttcataaaaataacaacaaaa 500

                                                                       
Query: 301 ccaagtatggactctttccctcaagaatgaatataaaaggaatctgtcacacacaaaaac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ccaagtatggactctttccctcaagaatgaatataaaaggaatctgtcacacacaaaaac 560

                                                 
Query: 361 aaacaaataaataacaacagaaacccactatatcccag 398
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aaacaaataaataacaacagaaacccactatatcccag 598


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 398
Length of database: 798
Length adjustment: 9
Effective length of query: 389
Effective length of database: 789
Effective search space:   306921
Effective search space used:   306921
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)