BAC Information

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BAC

Clone NameMSMg01-055L03
Chromosome4 (Build37)
Map Location 127,568,298 - 127,568,751
singlet/doubletsinglet
Overlap genenone
Upstream geneSfpq, Zmym1, LOC665245, Zmym6, LOC100039968, LOC621588, Dlgap3, BC003266, Gja4, Gjb3, Gjb4, Gjb5, LOC667296
Downstream geneLOC635169, 4930465A12Rik, Hmgb4, 4930546G22Rik, Zscan20, Tlr12, Phc2, A3galt2, BC039093, LOC667354, Trim62
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-055L03.T7 (MSMg01no055_l03.b1)MSMg01-055L03.TJ (MSMg01no055_l03.g1)
ACCAG283295AG283296
length693825
length of high quality
(start - end)
464 (47 - 510)39 (75 - 113)
definitionCHROMAT_FILE: MSMg01no055_l03.b1 PHD_FILE: MSMg01no055_l03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:57:10 2005CHROMAT_FILE: MSMg01no055_l03.g1 PHD_FILE: MSMg01no055_l03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:57:10 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTGAGAGTCACCCTTTAGGATCTCAATTTTTTTTTTTTTTTAGAT
TAATGAAGATTAATGACCCAGGTTCAGGCCTGTCTTAGTGAATGGCACAT
GTCTACTGATATTGGAGTAGTATGTTACAATGCCAGGTTATTCTCAGTGT
TTGATGGGTCAGGTTTTCTCTACCCAGACTGCCTTTTACCTCTTACTGAC
TTTGTACTGAGTGGCATGACAACCTGCGGTCCTGACTCTGAGTTTGTCTG
TTTCCCTTCTGGCTCCCCTAAGCCTTTATGTGCCTTAAAATTCTATTATT
GTGAGTCCACACGCTTAAGACAGCCATGCATCCTCTTTGTTCCTAATACT
TAGTCTAATGTCAGTACAATTAAACCAGGCTTTCTGTGGTTAGTGTTTGT
GTGTCAGCCTACCTGTGTCATTATATTTAAATAATGTTTTTTTTTATAGC
ACATGTTGTATACAGTTGATCTTTGCTTTATAAATATAAGCCCCACGGCC
TCTCTTAATTGGAGTGCTGACAATATTTACCCCTAATGTAATTATCAGTG
TGGTGAGGTTTCTATTTGCCACCTGGCAATTACGTTTCTACTGACCCCAG
GCTGCTTCCTCCAACTTGTCTCTTTCTTCTCCATGGTCTCCCC
CAATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXATTCAGATAAACGTCCTCATTCCTCAA
GGAATTTTTTGGCTGCTGGTGTTTGTTTCCTTGTTTGTTTGTTTGTTTTT
TGTTTCGTTTTGTTCTGTTTTTCGCCTCCCAACACACGCCTTCTTAGCCT
ACCCCCGACAGCCCAGCAACTCACTCTCCACAACACCCCCACCCCCAACT
CACAAATCCCCCTGCCCCTGCCCCCCAACCCCTAAACATTAAACTCATGC
ACCCCCACTCCCCGCCATAACCACACCCCCACCCCCCCCCCAAAACCATA
AAACCACCCCCCCATCCCACACCCCCGCCATTACCCCCCCCAAACCAAAA
CCAACCCCCCCCCACCCCCCCCATACATCCTCCCCAACCATATTAAATCC
CCCCCTAATACCCCTCAAACCCCCACCTCACCAACCCCCCACCCCCCCAC
AACCACCCCCCCCCACCCCCCCCCTACTAAACCCACCCAAACTAACTACC
TCCCCCAACACCCCCGCCCCCCCCCCCCCATCCCCACTCATCACCTCCCC
CAACCCACCCCCTCTTCTCCCCCCCCTATCCCTACCCCTAACTACCCCCC
CCTTCACTTATCAATCCCCACACCCTCTCCCTTCCCTACCCCATTCCCCT
CCCTTCACAATACCCACTACAAACCATTCTCCCCCTCCCATCATACCTNA
CCCAACCAAAATCCCCTCATACCCTCCATACCACGCACCCCCCCCAAACC
CCCACCCACCATTATATCTCCCATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no055_l03.b1 MSMg01no055_l03.b1 CHROMAT_FILE:
MSMg01no055_l03.b1 PHD_FILE: MSMg01no055_l03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:57:10 2005
         (464 letters)



>mm_chr4_127568134_127568992
          Length = 859

 Score =  835 bits (432), Expect = 0.0
 Identities = 451/460 (98%), Gaps = 6/460 (1%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctgagagtcaccctttaggatctcaatttttttttttttttagattaatgaagat 64
           ||||||||||||| |||||||||||||||||     ||||||||||||||||||||||||
Sbjct: 618 gaattctgagagttaccctttaggatctcaa-----ttttttttttagattaatgaagat 564

                                                                       
Query: 65  taatgacccaggttcaggcctgtcttagtgaatggcacatgtctactgatattggagtag 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 taatgacccaggttcaggcctgtcttagtgaatggcacatgtctactgatattggagtag 504

                                                                       
Query: 125 tatgttacaatgccaggttattctcagtgtttgatgggtcaggttttctctacccagact 184
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 tatgttacaatgccagtttattctcagtgtttgatgggtcaggttttctctacccagact 444

                                                                       
Query: 185 gccttttacctcttactgactttgtactgagtggcatgacaacctgcggtcctgactctg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 gccttttacctcttactgactttgtactgagtggcatgacaacctgcggtcctgactctg 384

                                                                       
Query: 245 agtttgtctgtttcccttctggctcccctaagcctttatgtgccttaaaattctattatt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 agtttgtctgtttcccttctggctcccctaagcctttatgtgccttaaaattctattatt 324

                                                                       
Query: 305 gtgagtccacacgcttaagacagccatgcatcctctttgttcctaatacttagtctaatg 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 gtgagtccacacgcttaagacagccatgcatcctctttgttcctaatacttagtctaatg 264

                                                                       
Query: 365 tcagtacaattaaaccaggctttctgtggttagtgtttgtgtgtcagcctacctgtgtca 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 tcagtacaattaaaccaggctttctgtggttagtgtttgtgtgtcagcctacctgtgtca 204

                                                   
Query: 425 ttatatttaaataatgtttttttttatagcacatgttgta 464
           |||||||||||||||| |||||||||||| ||||||||||
Sbjct: 203 ttatatttaaataatg-ttttttttatagtacatgttgta 165


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 464
Length of database: 859
Length adjustment: 10
Effective length of query: 454
Effective length of database: 849
Effective search space:   385446
Effective search space used:   385446
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)