BAC Information

Click to search

BAC

Clone NameMSMg01-055P21
Chromosome4 (Build37)
Map Location 96,437,451 - 96,437,998
singlet/doubletsinglet
Overlap geneLOC620779
Upstream gene2310009E04Rik, Hook1, Cyp2j13, LOC242546, LOC546837, Cyp2j11, LOC665095, Cyp2j6, Cyp2j9, Cyp2j5, LOC100039415
Downstream geneLOC620883, EG638698
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-055P21.T7 (MSMg01no055_p21.b1)MSMg01-055P21.TJ (MSMg01no055_p21.g1)
ACCAG283511AG283512
length693735
length of high quality
(start - end)
557 (39 - 595)541 (74 - 614)
definitionCHROMAT_FILE: MSMg01no055_p21.b1 PHD_FILE: MSMg01no055_p21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:57:32 2005CHROMAT_FILE: MSMg01no055_p21.g1 PHD_FILE: MSMg01no055_p21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:57:32 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATCCGCGGAA
TTCACAAATCTGCCAAAGGGATAGCTCCAGGTGAACATTACTGTCTCCTT
TCTCTGCATCTCCATGAGGAATACTGAGTATTCTCAGAGGAGAGCATCCA
TGCTCCCAAACTGGAGTCACAAAAGTCTGTGTTCTCCATCTCCATGCTAG
CAAACTGTCCTCATTTCCTATTTAGATACCAGGTCTCTCACTCTTCATAG
CACATAATTCAAATAATTTCTCCTTAATTCAGACTTTCCATTGCATTCTT
TCCCAATGAGACCAATCAAGTAACTGTCTTATTAGCAGAGAAAAAAATTA
AGAGATTAGAAGTTATTAACCTGTTGTCACCAAACACATAAATGGGAGTG
CATGTGTCCATGATTGCATTTTTCCTGCACTGGGCCTCTCTGATCAAATC
TCTTATTGTATCTGATCCACTGTGCTTCTTTAGTACCATTTTCTCCACAT
CAGCATTGCAATGTGTGGAAATCCTGGCCATCTCTAAACACAACAGTAGG
AGAGAGCTGTCTGAAAACCCAGGTTATTTGCCACACCCCTCAACTCAGGT
AGCTCGACTTCTTCACTCTGTTCTTCCCACCTCCTCTCTCTGGTTCCTCA
TCTCTGTCTTACCTTCCTTCATTTTATTCTAGTGTCACTTTCA
CATTGTAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTGCACTAAACCCATCTGGTCCTGGGCT
TTTTATTGGCTGGGAGACTATTTATGACTGCTTCTATTTCTCTAGGGGCT
ATAGGATTGTTAGATGATTAACCTGCTCCTGATTTAAAATTGTTACCTGG
TATCTGTTTAGAAACTTGTCCATTTCATCCAGGTTCTCCAGTTTTGTTGA
GTATAGCCTTTTGTAATAGGATCTGATTGTGTTTTGGATTTATTCAGAAT
CTGTTGTCATGTCTCCCTTTTCATTTCTGAGTTTGTTAATTAGGATGCTG
TTCCTGTGCCCTCTAGTGAGTCTGGCTAAGGTTTTTCTACCTTGTTGCTT
TTCTCAAAAAACCAGCTCCTCCTTTCGTTGATTCTTTGAATAGCTCTTGT
TTCCACTTGGTTGATTTCGCCTCTGAGTTTCGTTATTTCCTGCCATCTAC
TCCTCTTGGGTGAATTTGCTTCCTTTAGTTCTAAAGCTCTTAGGTGTGCT
GTCAAGCTGCTAGTGTGTTCTCTCTCTAGTTTCCTTTTGGAGGGACTCAG
AGCTATGAGTTCTCCTCTTACAAATGTTTTCATTGTGCCCCATAAGTTTG
GGTATGTTGCGGCTTCATTTTCATTAAACTCTACAAAGTCCCTAATTTTT
TCCTTATTCCTTCCTTGACCAAAGTATTCTTGCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no055_p21.b1 MSMg01no055_p21.b1 CHROMAT_FILE:
MSMg01no055_p21.b1 PHD_FILE: MSMg01no055_p21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:57:32 2005
         (557 letters)



>mm_chr4_96437243_96438198
          Length = 956

 Score = 1038 bits (537), Expect = 0.0
 Identities = 546/549 (99%), Gaps = 1/549 (0%)
 Strand = Plus / Minus

                                                                       
Query: 9   ggaattcacaaatctgccaaagggatagctccaggtgaacattactgtctcctttctctg 68
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 756 ggaattcacaaatctggcaaagggatagctccaggtgaacattactgtctcctttctctg 697

                                                                       
Query: 69  catctccatgaggaatactgagtattctcagaggagagcatccatgctcccaaactggag 128
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 696 catctccatgaggaatactgagtattctcagaggagagcatccatgctcccaaactggag 637

                                                                       
Query: 129 tcacaaaagtctgtgttctccatctccatgctagcaaactgtcctcatttcctatttaga 188
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 636 tcacaaaagtctgtgttctccatctccatgctagcaaactgtcctcatttcctatttaga 577

                                                                       
Query: 189 taccaggtctctcactcttcatagcacataattcaaataatttctccttaattcagactt 248
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 576 taccaggtctctcactcttcatagcacataattcaaataatttctccttaattcagactt 517

                                                                       
Query: 249 tccattgcattctttcccaatgagaccaatcaagtaactgtcttattagcagagaaaaaa 308
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 516 tccattgcattctttcccaatgagaccaatcaagtaactgtcttattagcagag-aaaaa 458

                                                                       
Query: 309 attaagagattagaagttattaacctgttgtcaccaaacacataaatgggagtgcatgtg 368
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 attaagagattagaagttattaacctgttgtcaccaaacacataaatgggagtgcatgtg 398

                                                                       
Query: 369 tccatgattgcatttttcctgcactgggcctctctgatcaaatctcttattgtatctgat 428
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 397 tccatgattgcatttttcctgcactgggcctctctgatcaaatctcttattgcatctgat 338

                                                                       
Query: 429 ccactgtgcttctttagtaccattttctccacatcagcattgcaatgtgtggaaatcctg 488
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 ccactgtgcttctttagtaccattttctccacatcagcattgcaatgtgtggaaatcctg 278

                                                                       
Query: 489 gccatctctaaacacaacagtaggagagagctgtctgaaaacccaggttatttgccacac 548
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 gccatctctaaacacaacagtaggagagagctgtctgaaaacccaggttatttgccacac 218

                    
Query: 549 ccctcaact 557
           |||||||||
Sbjct: 217 ccctcaact 209


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 557
Length of database: 956
Length adjustment: 10
Effective length of query: 547
Effective length of database: 946
Effective search space:   517462
Effective search space used:   517462
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)