BAC Information

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BAC

Clone NameMSMg01-056A22
Chromosome4 (Build37)
Map Location 49,229,470 - 49,229,762
singlet/doubletsinglet
Overlap geneE130309F12Rik
Upstream geneTxndc4, Invs, Tex10, 5730528L13Rik, Tmeff1, 2310039E09Rik
Downstream geneLOC666602, Rbpsuh-ps1, C730036D15Rik, LOC100040919, LOC666617, Rbpsuh-ps2, LOC230161, Baat, Mrpl50, Zfp189, Aldob, 2810432L12Rik, LOC100040742, Rnf20, Ppp3r2, LOC666663
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-056A22.T7 (MSMg01no056_a22.b1)MSMg01-056A22.TJ (MSMg01no056_a22.g1)
ACCAG283560AG283561
length698710
length of high quality
(start - end)
293 (58 - 350)582 (75 - 656)
definitionCHROMAT_FILE: MSMg01no056_a22.b1 PHD_FILE: MSMg01no056_a22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:57:37 2005CHROMAT_FILE: MSMg01no056_a22.g1 PHD_FILE: MSMg01no056_a22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:57:37 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCACTATCT
TCCTAAGTTTGGTGAATACAGTTTTGTAACATGTAAATATTTTGTACATA
TGCATTACCGTACATTGTGCCTTAATATGTCAAAATACAGAAAACAATTA
TAGCTGCACTGTTGAGGCATTGAAAGAACATAGTACACATAGTTATGACT
GTATAAAAGATTAGACAATGTACACAAATTATCTCCCAAGTTATTGATTC
TTACTGTATGGAATAGATTCTGCCACTGTAACTCTCTGTACCTAGATGCT
GGTGGCTTGACTAACATATAGGCTACTTCCTTATACTGTAGTTGTTGATA
GGAGATGCCTGTTCATCTCATCTCATCTCATCTCATCTCATCTCATCTCA
TCTCATCTCATCTCATCTCATCTCATTCTCTTCAGGACCAAATCCCTTGG
AGCCTCCATCCCAGAGTGGTTCCATGTTTATTTTTATAAGGTGAAACAAT
CTTGCAGACTCATAAAACTGACCTTTAAAGCTCATATTTGATCAGGTATG
TCATTACCACTAGCATTTCATTATCAAGAGCCATAAGCATATGGCCATTT
CCCATTACATCCAACATAAAAATGAACAGTGGAAAGAGAGAAAGTCTTTT
TTTCAGCCTAAGTAGTGTATCACTAAGCGTCCTCATGAGTTCTTTTCC
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCTGATCTTTCCAAAACTTTTATCATG
AATGGGTGTTGGATCTTGCCAAATGCTTTTTCTGCATCTAACGAGATGAT
CATGTGGTTTTTGTCTTTGAGTTTGTTTATATAATGGATTACATTGATGG
ATTTTCGTATATTAAACCATCCCTGCATCCCTGGAATAAAACCTACTTGG
TCAGGATGGATGATTTCTTTAATGTGTTCTTGGATTCGGTTAGCGAGAAT
TTTATTAAGGATTTTTGCTTCGATATTCATAAGAGAAATTGGTCTGAAGT
TCTCTATCTTTGTTGGATCTTTCTGTGGTTTAGGTATCAGAGTAATAGTG
GCTTCATAAAATGAGTTGGGTAGAGTACCTTCTACTTCTATCTTGTGAAA
TAGTTTGTGCAGAACTGGAATTAGATCTTCTTTGAAGGTCTGATAGAACT
CTGCACTAAACCCATCTGGTCCTGGGCTTTTTTTGGTTGGGAGACTATTA
ATAACTGCTTCTATTTCTTTAGGGGATATGGGACTGTTTAGAAGGTCAAC
TTGATCCTGATTCAACTTTGGTACCTGGTATCTGTCCAGAAATTTGTCCA
TTTCGTTCCAGGTTTTCCAGTTTTGTTGAGTATAATCTTTTGTATAAGGA
TCTGACGGCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no056_a22.b1 MSMg01no056_a22.b1 CHROMAT_FILE:
MSMg01no056_a22.b1 PHD_FILE: MSMg01no056_a22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:57:37 2005
         (293 letters)



>mm_chr4_49229270_49229962
          Length = 693

 Score =  422 bits (218), Expect = e-122
 Identities = 275/294 (93%), Gaps = 2/294 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttggtgaatacagttttgtaacatgtaaatattttgtacatatgcattaccgtacattg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||
Sbjct: 201 tttggtgaatacagttttgtaacatgtaaatattttgtacatatgcattagtgtacattg 260

                                                                       
Query: 61  tgccttaatatgtcaaaatacagaaaacaattatagctgcactgttgaggcat-tgaaag 119
           ||||||||||||||||||||| |||||||||||||||||||||||||| |||| | ||||
Sbjct: 261 tgccttaatatgtcaaaatactgaaaacaattatagctgcactgttgaagcatct-aaag 319

                                                                       
Query: 120 aacatagtacacatagttatgactgtataaaagattagacaatgtacacaaattatctcc 179
           ||||||||||| ||| |||| ||||||||||||||||||||||||||||||||| |||||
Sbjct: 320 aacatagtacatataattataactgtataaaagattagacaatgtacacaaattgtctcc 379

                                                                       
Query: 180 caagttattgattcttactgtatggaatagattctgccactgtaactctctgtacctaga 239
           ||||||||| |||||| |||||| |||||||||||||||||||||||| ||||||||| |
Sbjct: 380 caagttattaattcttgctgtatagaatagattctgccactgtaactcgctgtacctaaa 439

                                                                 
Query: 240 tgctggtggcttgactaacatataggctacttccttatactgtagttgttgata 293
           |||||||||||||||||||||| ||||||||| |||| ||||| ||||||||||
Sbjct: 440 tgctggtggcttgactaacatacaggctactttcttacactgtggttgttgata 493


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 293
Length of database: 693
Length adjustment: 9
Effective length of query: 284
Effective length of database: 684
Effective search space:   194256
Effective search space used:   194256
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)