BAC Information

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BAC

Clone NameMSMg01-056J04
Chromosome4 (Build37)
Map Location 44,919,843 - 44,919,968
singlet/doubletsinglet
Overlap geneZcchc7
Upstream geneReck, Glipr2, Ccin, Clta, Gne, LOC100040313, OTTMUSG00000007209, Rnf38, Melk, Pax5, 5730488B01Rik, LOC545618
Downstream geneD4Wsu132e, Grhpr, Zbtb5, 1700055D18Rik, Polr1e, Fbxo10, 1110019J04Rik, Frmpd1, Rg9mtd3, Exosc3, LOC666325, Wdr32, Mcart1, Shb, LOC100040140, LOC100040557, Gm829, LOC100040567, LOC100040580, Aldh1b1, Igfbpl1, 1300002K09Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-056J04.T7 (MSMg01no056_j04.b1)MSMg01-056J04.TJ (MSMg01no056_j04.g1)
ACCAG283951AG283952
length730769
length of high quality
(start - end)
339 (43 - 381)130 (71 - 200)
definitionCHROMAT_FILE: MSMg01no056_j04.b1 PHD_FILE: MSMg01no056_j04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:58:16 2005CHROMAT_FILE: MSMg01no056_j04.g1 PHD_FILE: MSMg01no056_j04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:58:16 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTTTACATATTACACTCACAGCACAGAGAACTAAAACAGAAAAAAGGAG
AACTACACAAGAAGTACAGCAATTAAAAAATTACCTATGTAGTAAGGAAA
GAAATGTTTTTGTCAGCCATGTATGTGACAGAGTTCCCAATTGTATGGAT
ATGTAAGGCACATGTAACCCTCAAAATAATAACATAAATAACCCAATTGA
AAATGGACGAGAAACTTGAATTGATCATTTTTCTCAAGAAATATAGTTGG
GTAAAAAAATATGGTGCTCAATATCACTAGTCATAGGGAAATGCAAGTCA
GAACCACCATGAGATGTCACCTCATACCTATTCAAATGGCTTTTATTAAA
ATGATAAATCATACCATTAAATTGACACCGATGTGAGGGAAAAGGAACCC
TTGTATATTCCAGTGCCTCCCTTATTGTAAAAATTGTTAAAATCCCCTCA
AAGAATCTTGAAATGAAACACATGGTCTAACTAATCTATTCCCACCCCCT
GGAATGGTTTACCTCTATATGATATAATAATATTTTTTCCTCAATAAAGA
AATTAAAGGCTTGTTTCATCTTTTGTTTATACTTCTTTATTCAACAATTC
AAATAAAAAATAAAAGGTAGTAAATTATTAATTAGTGTTATTTTTTTTAA
ATTTATAGTGATCTCTACTTTACCCCCAAT
TGATGTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCTTGGTTTTTGAACAATCATCTGATTGCCC
TGTACAGGAAGATGATGACTGATATGGGAGTGGATGATATGAAACTTCTT
CTCTTTTATTAGATAACAGTACTACAATTAAAAAAGACTTCAAAGCAGAG
GCCATTGCGAGAGCATACATGTTAATTCTAAATACAAAATGTAACCGCAA
TCATTAATCAAAATTTAAAATCCTATTTTTCCTACTAGCTAAACTTTGGT
GACTTCCTCTTCCTATCCTCCTGATATTTGTATCCATAGATATCTTAAAA
ATTCTCAGTAAGTAAAACGGCTAAACAGGAAAAATTTAGATAGAAAAAAC
TTCGTAAGAAAGAATCTAATTACCGCCAGTGACCACCTGGCCTGATTTAA
ATATTTTGAATCGAATGTTTATTCCTCCTGAACTGTATCCATACACATAT
CCCACTCTTGTTTCCCCTGTCTCATGGTATTCCACTTTATCTGGTCACTT
AACCTAGCTTGTACATCTACAAAAAATTCATTATTCTTCTCTTAAACCTG
GAATTATAATATGTTGATTCCTCAGCTATGCAAATCTTCGGGCACAAAAC
ATTATACCAGTCCTATTAGAATTAAATAACACTATCCTCTGCCTATAATG
ACTGACTCGCTTCTTTTTCTATATTATCCCCCCCCTAGCATCCTCTCTCC
ACTTCGCCCATGGCCCCAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no056_j04.g1 MSMg01no056_j04.g1 CHROMAT_FILE:
MSMg01no056_j04.g1 PHD_FILE: MSMg01no056_j04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:58:16 2005
         (130 letters)



>mm_chr4_44919639_44920168
          Length = 530

 Score =  244 bits (126), Expect = 2e-69
 Identities = 126/126 (100%)
 Strand = Plus / Minus

                                                                       
Query: 5   gtttttgaacaatcatctgattgccctgtacaggaagatgatgactgatatgggagtgga 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 gtttttgaacaatcatctgattgccctgtacaggaagatgatgactgatatgggagtgga 271

                                                                       
Query: 65  tgatatgaaacttcttctcttttattagataacagtactacaattaaaaaagacttcaaa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 tgatatgaaacttcttctcttttattagataacagtactacaattaaaaaagacttcaaa 211

                 
Query: 125 gcagag 130
           ||||||
Sbjct: 210 gcagag 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 130
Length of database: 530
Length adjustment: 8
Effective length of query: 122
Effective length of database: 522
Effective search space:    63684
Effective search space used:    63684
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)