BAC Information

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BAC

Clone NameMSMg01-057A09
Chromosome4 (Build37)
Map Location 63,690,369 - 63,690,919
singlet/doubletsinglet
Overlap genenone
Upstream geneZfp618, Ambp, Kif12, Col27a1, Orm1, Orm-ps, Orm3, Orm2, Akna, Whrn, Atp6v1g1, 6330416G13Rik, LOC670833, 1700018C11Rik, LOC667451, Tnfsf15, Tnfsf8, Rpl17-ps, Tnc
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-057A09.T7 (MSMg01no057_a09.b1)MSMg01-057A09.TJ (MSMg01no057_a09.g1)
ACCAG284284AG284285
length692693
length of high quality
(start - end)
570 (73 - 642)551 (70 - 620)
definitionCHROMAT_FILE: MSMg01no057_a09.b1 PHD_FILE: MSMg01no057_a09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:58:50 2005CHROMAT_FILE: MSMg01no057_a09.g1 PHD_FILE: MSMg01no057_a09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:58:50 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGAGCCGCGG
AATTCTTTGTTTCCATAAAAGCCTCATTTTTTAATGGGGTTAATCTGATT
TTCTGGAGTCCACCTTTTTCCGGTCTTTATATATATTAGATATTAGTTCC
CTATCTGATTTAGGATAGATAAAGATCCTTTCCCTGTCTGTTGGTGGCCT
TTTTGTCTTATTGACGGTGTCCTTTGCCTTACAGAAGCTTTGCAATTTTA
TGAGCTCCCATTTGTCAATTCTCGATCTTACAGCACAAGCCATTGCTCTT
CTTTTCAGGAATTTTTCTTTTTTGCCCATATCTTCGAGGTTTTTCCCTAC
TTTCTCCTCTATAAGTTTCACTGTCCAGGGTTTTATGTGGAGTTCCTTGA
TCCATTTGGATTTGACCTTATTACAAGGAGATACAAATGGATCACTTCCC
ATTCTTCTACATGTTAACCGCCAGTTGTGCCAGCATCATTTGTTGAAAAT
GCTGTTTTTTTTCCACTGGATGGTTTTAGCTCCCTTTTTGAAGATCAAGT
GGCCATAGGTGTGTGGGTTCATTTCTGGGTCTTTAATTCTATTCCATTGG
TCTACTAGTCTGTCACTATACCAGTACCATGCAGTTTTTATCACAATTGC
TCAGTAGTACAGCTTTCGGTCAGGCATGGTGTTTCCACCAGA
NACGATGAAGTGGTAGGCCTGGAGGCCGCCTGTCCAAAAAGGGAGGTGAC
CTATAGAATTACCAGCGGAATTCTGCTGGCCTGAGGTTTGCTCTTAGATG
CAGCCAGATAGAGACACTGGCAGTTACCAAACCCAGGAGGCATGAAGATC
AGCCAGCCTTGATACACTTTGATAGGACCTGACCTCTGAAATAAAAATGG
ATCTCTAAGATTGGTAGCAAGAAACCAGACACTATGGAAAACTGAGTCCA
CTCCAGTAATTAACTAGTGTGCCTAGAAAAGGCATGCAGACACATGGTGT
CTACTTTTCCTTTCTCAATAAGGGATCACCTAAAAGCTACAATAATAACC
AGTCCTGATTGAAAACATCTGTACTGTCTGTGCCTTGTATGGATTATTTC
ATTGCTTCTTCTCCAACATCCCTGACATTTCTTCCTTTATTTTCCTCTCC
CTGAGGATGGGGAAACTGGGGTCACATAGCTAGAAGAGGAGAGGAGAGTT
TAATTCAGGTGGTCTGACTCATCAGTTAGAGGCAGCATTCTTAACCCTCA
GCTTTCCTCCAGCAATTTAGTGAAGCCAAAGGCTGGTTTGCATGACTAAG
TTCAAAGGATTAACTTCAAAATAAGCTTGAGTTTGCCACTCCCCCCCCAA
AAAAACCTATTAACAGTATAAAACAACTTTATGAAGTTACACC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no057_a09.g1 MSMg01no057_a09.g1 CHROMAT_FILE:
MSMg01no057_a09.g1 PHD_FILE: MSMg01no057_a09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:58:50 2005
         (551 letters)



>mm_chr4_63690169_63691119
          Length = 951

 Score = 1035 bits (535), Expect = 0.0
 Identities = 547/551 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   attctgctggcctgaggtttgctcttagatgcagccagatagagacactggcagttacca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attctgctggcctgaggtttgctcttagatgcagccagatagagacactggcagttacca 260

                                                                       
Query: 61  aacccaggaggcatgaagatcagccagccttgatacactttgataggacctgacctctga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aacccaggaggcatgaagatcagccagccttgatacactttgataggacctgacctctga 320

                                                                       
Query: 121 aataaaaatggatctctaagattggtagcaagaaaccagacactatggaaaactgagtcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aataaaaatggatctctaagattggtagcaagaaaccagacactatggaaaactgagtcc 380

                                                                       
Query: 181 actccagtaattaactagtgtgcctagaaaaggcatgcagacacatggtgtctacttttc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 actccagtaattaactagtgtgcctagaaaaggcatgcagacacatggtgtctacttttc 440

                                                                       
Query: 241 ctttctcaataagggatcacctaaaagctacaataataaccagtcctgattgaaaacatc 300
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctttctcaaaaagggatcacctaaaagctacaataataaccagtcctgattgaaaacatc 500

                                                                       
Query: 301 tgtactgtctgtgccttgtatggattatttcattgcttcttctccaacatccctgacatt 360
           |||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct: 501 tgtactgtctgtgccttgtatggattatttcattgcttcttctcgaagatccctgacatt 560

                                                                       
Query: 361 tcttcctttattttcctctccctgaggatggggaaactggggtcacatagctagaagagg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tcttcctttattttcctctccctgaggatggggaaactggggtcacatagctagaagagg 620

                                                                       
Query: 421 agaggagagtttaattcaggtggtctgactcatcagttagaggcagcattcttaaccctc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 agaggagagtttaattcaggtggtctgactcatcagttagaggcagcattcttaaccctc 680

                                                                       
Query: 481 agctttcctccagcaatttagtgaagccaaaggctggtttgcatgactaagttcaaagga 540
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 agctttcttccagcaatttagtgaagccaaaggctggtttgcatgactaagttcaaagga 740

                      
Query: 541 ttaacttcaaa 551
           |||||||||||
Sbjct: 741 ttaacttcaaa 751


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 551
Length of database: 951
Length adjustment: 10
Effective length of query: 541
Effective length of database: 941
Effective search space:   509081
Effective search space used:   509081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)