BAC Information

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BAC

Clone NameMSMg01-057K02
Chromosome4 (Build37)
Map Location 81,575,849 - 81,576,194
singlet/doubletsinglet
Overlap genenone
Upstream geneD4Bwg0951e, Mpdz, LOC100040131, LOC100040144, EG668895
Downstream geneLOC100040164, EG545641, Nfib, Zdhhc21, Cer1, Frem1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-057K02.T7 (MSMg01no057_k02.b1)MSMg01-057K02.TJ (MSMg01no057_k02.g1)
ACCAG284740AG284741
length677690
length of high quality
(start - end)
446 (18 - 463)374 (57 - 430)
definitionCHROMAT_FILE: MSMg01no057_k02.b1 PHD_FILE: MSMg01no057_k02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:59:38 2005CHROMAT_FILE: MSMg01no057_k02.g1 PHD_FILE: MSMg01no057_k02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:59:38 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTCCTATATTCAGAGGATCCGCGGAATTCTATTCTATTGTCCGAATATGC
CATAATCTTTTTCTTCATTCACCCATGGAAGGCACTTAAAATTGCTTCAG
AATCTTTGTTACTGTGGATAATCCTGCAGAGTGCAGCTATCTCTTCAACA
GATTTAGGTTTCATTGGATAAAACTCTCCAAGGTAGGATATCTGGACCAC
ATGGCAGTTCTAATTTCAGCTTATTGATGATTCACCATTGCACGTTCTAT
CCTGGATACCCTTGCACTCCTATCAGCATCAGCGTTCCCTCTCTTCCATA
AGCACACCAACATTTGCTCTCTTCTATGGTTTTGATAAGTCATTCAAGCA
AGTGTGTTGGGGCACATTATACTGTGATTGTAATGTGCATTTTCTTGATG
ATTCCTGATACTGGATAGTTTTTCATGTGCCTTTTGAGCAGCTTGACTCA
TGAGGCATATCTGTTCAAGTCCTTTCTTTGTTTTCCCCACTGGGCTGTTT
TTCTCCTAACATTGAGTCCAGTTCTGCCCATATTTCTGATGTTATTAGCC
CCCTTATCAAATGATGGGTTTGCAAACAATTTTCTCCATCCTTGTCTGCC
ACTTTGCTGTGCTCTGAACTTCCTTTGGGAACAAGCTTTTGTTATTTGCT
AAACGCCCCCCTAATTTTTTTTTCCTT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXATTCAGAAACTGCTTATGTAACCAACCAGGGACTTCTTAAAAGA
ACCTGCTCTATAAAAATATCTCAATATTAAATGTTAGATCTGAATGAATG
AATGAATGAATGAATGAATGAATGAATGAAGCAATTGCCTACCTCTGGGG
GGAAAAAGGAGGGGAAGCTCTAATTGAACACCCTCAAACCTACAACCCTG
GCCTGTGCCTGATCCAAAGGGCTGCCTCTCAGAAAAATCCACATTTAAAG
TGCAGAAATCCCCAGACCCACATTTGCATTAGATAATGCTTCATTGGAAA
CCCGGGGGTGGGGAGTAAATTGAAAACTGAGAGCATGGAGACTGCCCATT
CATCAGACTTTTCTGAGCTTTGATCACAATCAGAAAGAACGATATCACTT
GAGTAGGATCCCCAGAGTCATCACTCTGCAGACTTCTCATACCAAAGGTG
TTCACAGTTGAACTACAGAGCGAGGGTCTTTATCTTTAACGTTAACGGGT
ATATTCCTTATTTCTGTGATGAAATGGCATGACCAAAGCTATTTATTTAT
AGAAGCCGGTCCTTTCCGGTTTATGGTTCCCTGAAGCTTGGAAAGTCCAC
CATGGTAAGGCCCCCCTTCAAATTAGCCCGTTGGATTAAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no057_k02.g1 MSMg01no057_k02.g1 CHROMAT_FILE:
MSMg01no057_k02.g1 PHD_FILE: MSMg01no057_k02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:59:38 2005
         (374 letters)



>mm_chr4_81575625_81576398
          Length = 774

 Score =  565 bits (292), Expect = e-165
 Identities = 339/370 (91%), Gaps = 24/370 (6%)
 Strand = Plus / Plus

                                                                       
Query: 1   attcagaaactgcttatgtaaccaaccagggacttcttaaaagaacctgctctataaaaa 60
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 225 attcagaaactgcttatgtaaccaatcagggacttcttaaaagaacctgctctataaaaa 284

                                                                       
Query: 61  tatctcaatattaaatgttagatctgaatgaatgaatgaatgaatgaatgaatgaatgaa 120
           ||||||||||||||||||||||||||||||||||||||||                    
Sbjct: 285 tatctcaatattaaatgttagatctgaatgaatgaatgaa-------------------- 324

                                                                       
Query: 121 tgaagcaattgcctacctctggggggaaaaaggaggggaagctctaattgaacaccctca 180
               ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 325 ----gcaattgcctacctctgggggaaaaaaggaggggaagctctaattgaacaccctca 380

                                                                       
Query: 181 aacctacaaccctggcctgtgcctgatccaaagggctgcctctcagaaaaatccacattt 240
           | || ||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atccaacaaccctgccccgtgcctgatccaaagggctgcctctcagaaaaatccacattt 440

                                                                       
Query: 241 aaagtgcagaaatccccagacccacatttgcattagataatgcttcattggaaacccggg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaagtgcagaaatccccagacccacatttgcattagataatgcttcattggaaacccggg 500

                                                                       
Query: 301 ggtggggagtaaattgaaaactgagagcatggagactgcccattcatcagacttttctga 360
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ggtgaggagtaaattgaaaactgagagcatggagactgcccattcatcagacttttctga 560

                     
Query: 361 gctttgatca 370
           ||||||||||
Sbjct: 561 gctttgatca 570


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 374
Length of database: 774
Length adjustment: 9
Effective length of query: 365
Effective length of database: 765
Effective search space:   279225
Effective search space used:   279225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)