BAC Information

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BAC

Clone NameMSMg01-057L01
Chromosome4 (Build37)
Map Location 33,806,310 - 33,806,923
singlet/doubletsinglet
Overlap genenone
Upstream geneMdn1, Lyrm2, Ankrd6, LOC665298, Rragd, 4933421O10Rik, Ube2j1, LOC100039142, Gabrr2, Gabrr1, Acy1l2, Srrp, Pnrc1, Rngtt
Downstream geneLOC100041919, LOC100041924, Cnr1, Spaca1, LOC100039220, LOC665361, LOC665367, 2700059D21Rik, Orc3l, Rars2, Slc35a1, 1700003M02Rik, Gm136, 1810030N24Rik, Zfp292
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-057L01.T7 (MSMg01no057_l01.b1)MSMg01-057L01.TJ (MSMg01no057_l01.g1)
ACCAG284785AG284786
length690684
length of high quality
(start - end)
621 (46 - 666)568 (71 - 638)
definitionCHROMAT_FILE: MSMg01no057_l01.b1 PHD_FILE: MSMg01no057_l01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:59:43 2005CHROMAT_FILE: MSMg01no057_l01.g1 PHD_FILE: MSMg01no057_l01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:59:43 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NAAATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAAGAGGATCCG
CGGAATTCTCAGGAGTACTTGCCATCCAGGACCGGACTTCATCTGTTGCC
TACAGTACCTGGCTGTTTTCTGCACTCACTCCTCCATCCGTTTTCTCTGC
CTAAGCCTGTTTAGTGGTGTTAGTTCCTGGACCCAGCTTGGTGAGTCTCC
ACTTCAAGTGCTCCTTTCAGAGAAGGCTGCACCTACTCCAGGGTCTGATC
TTGGGAGGGCAAACTTGCTGCATTAAGAAGCTTTTATTCTTTTCTGAAAT
GGAGTCCTATCTGATTTGTTCAATAGCATCTGAGTTGCTCTGTAGCAACT
CTAAAATATTATTAGCAGGAACTGTTGAAATGAAGTCAAGTAAATGAAAA
GAATTTACTTCTATGTAATCTTTTCACTTTTTGTACATGCTTCAGAGACA
AGACTTACTGTAACACTTTGTAATGGCTTTTTTGGGATCTCGTTTCTTCT
TTCTTGCAATCTAGTGTGAGCGTCCCAGGAAGGTTTCTTAGTAACGTTCA
TAATTCTGTTTCATCTGCAATTTACCTGCTCAGCTCACAGATGGTCCAAC
TTTACTTTTTCATGATTGAGATGAAATTTCTCTTAGGTCCTACTATAGTA
TCTGAGAAAGTATCACAGACTCAAATTGCTAACTTAGGTG
CCCGATGCAGTGGGAGGCCTGGCGGCCGCCCGTTCATACGCAGTAGGTGA
CCTATAGAATTACTAGCAAAATTCTTTATAAATCTAGACTCCATTAAATT
GAAAAATCTGAAAGAAATGGATACATTCCTAGACTTGCCTAAACCATTGA
AGTTAAACCAAGAGGATATCTTTAACATAAACAGATCTATAGCAAATGAG
GAGACTGAAACATTAATTAAGAGGTCTTCTTACTAAAGAATGCTCTGGCC
CAGATGGATTCACCATAGAATTCTGGGAAATTTTCAAAGAACTTCAATAG
CCAATATTTCTCAAATTATTTTTTACAGAGAAAGAAACAGAAGAAGCTCT
TTCAAACTCATTCTACAAATCCAGCATTACACTAACACCAAAACCATGTC
AAGACACAACAACAACAACAGAACCTTACAGGCTTGCATCCCTAATGAAT
AGACATTGAAAAATCTTAAATAAATTCTTACAAGCAGAATACCAGCACAT
GTCAAAAGGATTATCCATCATGACTAAGTTGGCTTTATCTCTAAAGCTCA
GGAAATGTTCAACATGCATCAGTCAATAAGGGTAATGAATCATATGAATT
GATTTCATGATAAAAATCACATGATCATCTCAGTAGATAAAGAAAAATCT
GTAAATGCTATTTTTAAATGTTATTTAATAACTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no057_l01.b1 MSMg01no057_l01.b1 CHROMAT_FILE:
MSMg01no057_l01.b1 PHD_FILE: MSMg01no057_l01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:59:43 2005
         (621 letters)



>mm_chr4_33806103_33807123
          Length = 1021

 Score = 1149 bits (594), Expect = 0.0
 Identities = 609/614 (99%)
 Strand = Plus / Plus

                                                                       
Query: 8   gaattctcaggagtacttgccatccaggaccggacttcatctgttgcctacagtacctgg 67
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 208 gaattctcaggagtacttgccatccaggaccggacttcatctgttgcctacagtacctgg 267

                                                                       
Query: 68  ctgttttctgcactcactcctccatccgttttctctgcctaagcctgtttagtggtgtta 127
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 ctgttttctgcactcactcctccatccgttttctctgcctaagcctgtttagtggtgtta 327

                                                                       
Query: 128 gttcctggacccagcttggtgagtctccacttcaagtgctcctttcagagaaggctgcac 187
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 328 gttcctggacccagcttggtgagtcttcacttcaagtgctcctttcagagaaggctgcac 387

                                                                       
Query: 188 ctactccagggtctgatcttgggagggcaaacttgctgcattaagaagcttttattcttt 247
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 388 ctactccagggtctgatcttgggagggcaaacttgctggattaagaagcttttattcttt 447

                                                                       
Query: 248 tctgaaatggagtcctatctgatttgttcaatagcatctgagttgctctgtagcaactct 307
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 tctgaaatggagtcctaactgatttgttcaatagcatctgagttgctctgtagcaactct 507

                                                                       
Query: 308 aaaatattattagcaggaactgttgaaatgaagtcaagtaaatgaaaagaatttacttct 367
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 aaaatattattagcaggaactgttgaaatgaagtcaagtaaatgaaaagaatttacttct 567

                                                                       
Query: 368 atgtaatcttttcactttttgtacatgcttcagagacaagacttactgtaacactttgta 427
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 atgtaatcttttcactttttgtacatgcttcagagacaagacttactgtaacactttgta 627

                                                                       
Query: 428 atggcttttttgggatctcgtttcttctttcttgcaatctagtgtgagcgtcccaggaag 487
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 atggcttttttgggatctcgtttcttctttcttgcaatctagtgtgagcgtcccaggaag 687

                                                                       
Query: 488 gtttcttagtaacgttcataattctgtttcatctgcaatttacctgctcagctcacagat 547
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 688 gtttcttagtaacgttcataattctgtttcatctgcaatatacctgctcagctcacagat 747

                                                                       
Query: 548 ggtccaactttactttttcatgattgagatgaaatttctcttaggtcctactatagtatc 607
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 748 ggtccaactttactttttcatgattgagatgaaatttctcttaggtcccactatagtatc 807

                         
Query: 608 tgagaaagtatcac 621
           ||||||||||||||
Sbjct: 808 tgagaaagtatcac 821


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 621
Length of database: 1021
Length adjustment: 10
Effective length of query: 611
Effective length of database: 1011
Effective search space:   617721
Effective search space used:   617721
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)