Query= MSMg01no058_d04.b1 MSMg01no058_d04.b1 CHROMAT_FILE:
MSMg01no058_d04.b1 PHD_FILE: MSMg01no058_d04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:00:23 2005
(289 letters)
>mm_chr4_126086936_126087623
Length = 688
Score = 513 bits (265), Expect = e-150
Identities = 283/289 (97%), Gaps = 1/289 (0%)
Strand = Plus / Minus
Query: 1 catgcatggaaatgatgcattgtagctgtgtttctttcatagctgccacctagataaata 60
||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct: 488 catgcatggaaatgatgcattgtagctgtgtttctttcatagctgtcagctagataaata 429
Query: 61 agtttacttgataggagaatggctaactaatgtagagtatgttatatcagaaatggatca 120
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 428 agtttacttgataggagaatggctaaataatgtagagtatgttatatcagaaatggatca 369
Query: 121 agtgagtttaaaatcatttacaactgcttttcatagatgaagcctttgaaaataattttg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 agtgagtttaaaatcatttacaactgcttttcatagatgaagcctttgaaaataattttg 309
Query: 181 aaaaataactattttgaaaaaataactgatcttgccacagcagtacttttttaaaaatca 240
||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||
Sbjct: 308 aaaaataactattttgaaaaaataactgatcatgccacagcagtacttttt-aaaaatca 250
Query: 241 catatggaatgtaaaggtaggaacacataggagtacatggctcaccaag 289
||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 249 catatggaaggtaaaggtaggaacacataggagtacatggctcaccaag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 688
Length adjustment: 9
Effective length of query: 280
Effective length of database: 679
Effective search space: 190120
Effective search space used: 190120
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no058_d04.g1 MSMg01no058_d04.g1 CHROMAT_FILE:
MSMg01no058_d04.g1 PHD_FILE: MSMg01no058_d04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:00:23 2005
(244 letters)
>mm_chr4_125938497_125939140
Length = 644
Score = 433 bits (224), Expect = e-126
Identities = 239/244 (97%)
Strand = Plus / Plus
Query: 1 gcacagtgcccacagggctgaccactaaggatagacggcgggagccaaatccaaagggct 60
||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||
Sbjct: 201 gcacagtgcccacagggctgaccactaaggagagacggccggagccaaatccaaagggct 260
Query: 61 gtggtcagtgatgacagggctttgcctcggtgaagggtaagaagggtttggtcagctagc 120
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 261 gtggtcagtgatgacagggctttgcctctgtgaagggtaagaagggtttggtcagctagc 320
Query: 121 acattcctcaacgattgttggcctgtgtttggatctgttggactgtcttgatagtgtagc 180
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acattcctcaacgattgttgggctgtgtttggatctgttggactgtcttgatagtgtagc 380
Query: 181 tcgaagggaatcacatttcctctatgccttttctgtgcccacgatctgtgctcatgtctc 240
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcgaagggaatcacatttcctctgtgccttttctgtgcccacgatctgtgctcatgtctc 440
Query: 241 atta 244
||||
Sbjct: 441 atta 444
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space: 149225
Effective search space used: 149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
