BAC Information

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BAC

Clone NameMSMg01-058F09
Chromosome4 (Build37)
Map Location 11,480,683 - 11,481,322
singlet/doubletsinglet
Overlap genenone
Upstream gene1700123O12Rik, LOC383991, LOC100039656, LOC545589, 2610301B20Rik, LOC383992, LOC100039746, Plekhf2, 2310030N02Rik, LOC546828, LOC666897, Trp53inp1, Ccne2, Ints8, Dpy19l4, Rbm35a, LOC634834, 1110037F02Rik
Downstream geneLOC100039847, E130016E03Rik, LOC100039862, Gem, Cdh17, Ppm2c, Tmem67, C430048L16Rik, LOC230010, LOC623671, LOC100039958, Rbm12b, 6720467C03Rik, LOC545592
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-058F09.T7 (MSMg01no058_f09.b1)MSMg01-058F09.TJ (MSMg01no058_f09.g1)
ACCAG285275AG285276
length706704
length of high quality
(start - end)
310 (47 - 356)626 (77 - 702)
definitionCHROMAT_FILE: MSMg01no058_f09.b1 PHD_FILE: MSMg01no058_f09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:00:33 2005CHROMAT_FILE: MSMg01no058_f09.g1 PHD_FILE: MSMg01no058_f09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:00:33 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCCAGGATTGCCAGAACTACACAGAGAAACCCTGTCTTGGAGCAAC
AGAGAGAGAGAGAGAGAGAGCCAGAGAGAGAGAGAGAGAGAGAGAGAGAG
AGAGAATGCCTGGCACTTGAAACCTAGCTAACTAATTAGTGCTAGTGAAG
TTATGGTTATTAGAGGAGAATTTACAACCACTAATTTACTAAACCAGCAT
AATTCCTAACAATGATCAATAAGCCTTTGTCCTTATACTCACAGGCAAGT
GTAGTCTTCACCCCTCATCAAGGACACTTCTTTTTGCAACAGGCAGAAAT
GTCAACCATTGTTTTATACCTCCTTGCGGAGCCCAGTCCCAATGTATACG
TCTACAAAATACTTCCCCACTTAAGGCTCAGGGAACATTGCTGAAGAAGG
GGAGGAAAGACTGTAAGAGCCTGTGAGATTGTGTCTTCTAGTAACATCAG
AAGTTATAACCGTAAAATCTCACCAACATGACTGCCCAAATGTGAGATGA
ACAAGGATCACACCAGTGAGCATGCCAAATCGATGGAGGAAAACCCCACA
AGGCCTCAACCCTACACAAAGACCGACAGGAAACGGAGGATAGGGGGGAT
CAAGAGAGGTGGTCCTCCCAGGGGAGAGCACCACTGATAGCCACTCTCTA
CTAAAN
CAATTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCAGGCTAGCCAGGGTGACATAGTA
GGACCCTGTATTTAAAAAAAAAAAAAAAATAGGAGGGCTGGAGAGATGGC
TCTTTGGTTAAGAGCACTGACTGCTCTTCCAGAGGTCCTGAGTTCAATTC
CCAGCAACCACATGGTGGCTTACAACCATTTGTAATGGGGATCCGATGAC
CTCTTCTGGTGTGGCTGAAGACAGCGACAGTGTATTCACATACATGGAAT
AAATAAATAATAAATAAAATCTTTTTTTTAAAAGGAAGTAATACAGAGAT
GTTATAGGAGACATAAAAGCCCATACGAATAGTCTAGAGAATGGCACATG
CTTAAGTATCAGAAGAGCAGCAAATGGAAGGCCAGCAGGTGAGAGCCAGG
ACGGGGCCAGTAGACACCAGTCTCTGCACCAGGGAGGAAACTACGAATTG
GGTACTATTGGCTCTGTAGGGTGCTGGCAGCTAAACAACTCTAACTTCAC
GTTGATAGGTAGAGGCCTGAAGCAACTTCTGATTTGCTTCTTAGAATTAC
CAAGTTTTCATGGTAAATAAGACTTACGGTTGTAACCATTTTCTTAACAT
CTTAAAATATATGTATGTATGGGTATTGCATTTGAGTGCAGGTGCCCAAG
GTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no058_f09.g1 MSMg01no058_f09.g1 CHROMAT_FILE:
MSMg01no058_f09.g1 PHD_FILE: MSMg01no058_f09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:00:33 2005
         (626 letters)



>mm_chr4_11480497_11481522
          Length = 1026

 Score = 1038 bits (537), Expect = 0.0
 Identities = 606/651 (93%), Gaps = 36/651 (5%)
 Strand = Plus / Plus

                                                                       
Query: 1   caggctagccagggtgacatagtaggaccctgtatttaaaaaaaaaaaaaaaataggagg 60
           ||||||||||||||||||||||||||||||||||||     |||||||||||||||||||
Sbjct: 187 caggctagccagggtgacatagtaggaccctgtatt-----aaaaaaaaaaaataggagg 241

                                                                       
Query: 61  gctggagagatggctctttggttaagagcactgactgctcttccagaggtcctgagttca 120
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 gctggagagatggctctgtggttaagagcactgactgctcttccagaggtcctgagttca 301

                                                                       
Query: 121 attcccagcaaccacatggtggcttacaaccatttgtaatggggatccgatgacctcttc 180
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 302 attcccagcaaccacatggtggcttacaaccatttgtaatggggatctgatgacctcttc 361

                                                                       
Query: 181 tggtgtggctgaagacagcgacagtgtattcacatacatggaataaataaataa------ 234
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||      
Sbjct: 362 tggtgtggctgaagacagcgacagtgtattcacatacatggaataaataaataaataaat 421

                                                                       
Query: 235 -------------------taaataaaatcttttttttaaaaggaagtaatacagagatg 275
                              ||||||||||||||||||| |||||||||||| ||||||||
Sbjct: 422 aagtaaatcaataagtaaataaataaaatctttttttttaaaggaagtaatgcagagatg 481

                                                                       
Query: 276 ttataggagacataaaagcccatacgaatagtctagagaatggcacatgcttaagtatca 335
           ||| ||||||||||||||| ||||      ||||||||||||||||||||||||||||||
Sbjct: 482 ttacaggagacataaaagcgcata------gtctagagaatggcacatgcttaagtatca 535

                                                                       
Query: 336 gaagagcagcaaatggaaggccagcaggtgagagccaggacggggccagtagacaccagt 395
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 536 gaagagcagcaaatggaaggccagcaggtgagagccaggacggggccagtagataccagt 595

                                                                       
Query: 396 ctctgcaccagggaggaaactacgaattgggtactattggctctgtagggtgctggcagc 455
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 596 ctctgcaccagggaggaaactacgagttgggtactattggctctgtagggtgctggcagc 655

                                                                       
Query: 456 taaacaactctaacttcacgttgataggtagaggcctgaagcaacttctgatttgcttct 515
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 656 taaacaactctaacttcgcgttgataggtagaggcctgaagcaacttctgatttgcttct 715

                                                                       
Query: 516 tagaattaccaagttttcatggtaaataagacttacggttgtaaccattttcttaacatc 575
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 716 tagaattaccaagttttcatggtaaataagacttacggttgtaaccattttcttaacatc 775

                                                              
Query: 576 ttaaaatatatgtatgtatgggtattgcatttgagtgcaggtgcccaaggt 626
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 776 ttaaaatatatgtatgtatgggtattgcatttgagtgcaggtgcccaaggt 826


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 626
Length of database: 1026
Length adjustment: 10
Effective length of query: 616
Effective length of database: 1016
Effective search space:   625856
Effective search space used:   625856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)