Query= MSMg01no058_n12.b1 MSMg01no058_n12.b1 CHROMAT_FILE:
MSMg01no058_n12.b1 PHD_FILE: MSMg01no058_n12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:01:12 2005
(244 letters)
>mm_chr4_141832601_141833244
Length = 644
Score = 414 bits (214), Expect = e-120
Identities = 220/222 (99%)
Strand = Plus / Plus
Query: 1 gtgaatggtgataacactttctccatctgtttaactggagtttattcgcattgctcagac 60
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 201 gtgaatggtgataacactttctccatctgtttaactggagtttattagcattgctcagac 260
Query: 61 tccgccaaaattttcagtgctggagacacaccccagtgaatacaacatacagtcctcatg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tccgccaaaattttcagtgctggagacacaccccagtgaatacaacatacagtcctcatg 320
Query: 121 taatgtactaacaaaagcgatctgtactgctcatcatgcacacataggttatagtctaca 180
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 321 taatgtactaacaaaagcgatctgtactgctcatcatgcacacataagttatagtctaca 380
Query: 181 cagaagcatgcacgtgtgtgtgtgtgtgtgtgtgtgtgtgtg 222
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cagaagcatgcacgtgtgtgtgtgtgtgtgtgtgtgtgtgtg 422
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 13
Number of successful extensions: 13
Number of sequences better than 10.0: 1
Number of HSP's gapped: 13
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space: 149225
Effective search space used: 149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no058_n12.g1 MSMg01no058_n12.g1 CHROMAT_FILE:
MSMg01no058_n12.g1 PHD_FILE: MSMg01no058_n12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:01:12 2005
(300 letters)
>mm_chr4_141992614_141993309
Length = 696
Score = 534 bits (276), Expect = e-156
Identities = 293/300 (97%), Gaps = 4/300 (1%)
Strand = Plus / Minus
Query: 1 gaattctctagagtcaatgtaataatgctaagattgagagcttatgctgactcagagaga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 gaattctctagagtcaatgtaataatgctaagattgagagcttatgctgactcagagaga 437
Query: 61 ttatgggacttccggccactggcattttacagcctcacaggaaagctagccaaaatggtt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 ttatgggacttccggccactggcattttacagcctcacaggaaagctagccaaaatggtt 377
Query: 121 agctaggttaggatggtgcctatgtgacttgctggccaggctacaagtatgtggtccttt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 agctaggttaggatggtgcctatgtgacttgctggccaggctacaagtatgtggtccttt 317
Query: 181 ctcctgcacaggtgggttcgtgaacagtcttctctgtgagttctgagatgatgatgcctt 240
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 316 ctcctgcacaggtgggttcgtgaacagtcttctctgtgagttctga---gatgatgcctt 260
Query: 241 ccctacaggtcctgttaggaattagaaatgatacaaagaggttgactcaacaaaaggccc 300
|||||||||||| | ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 259 ccctacaggtccag-gaggaattagaaatgatagaaagaggttgactcaacaaaaggccc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 300
Length of database: 696
Length adjustment: 9
Effective length of query: 291
Effective length of database: 687
Effective search space: 199917
Effective search space used: 199917
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
