BAC Information

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BAC

Clone NameMSMg01-058N12
Chromosome4 (Build37)
Map Location 141,832,801 - 141,993,109
singlet/doubletdoublet
Overlap geneEG665983
Upstream geneEpha2, Gm693, Clcnka, Clcnkb, Hspb7, Gm694, Zbtb17, Spen, LOC100042951, B330016D10Rik, Fblim1, BC025833, Slc25a34, Plekhm2, Ddi2, Agmat, Dnajc16, Casp9, Ela2a, Ctrc, Efhd2, Fhad1, Tmem51, 9030409G11Rik
Downstream geneLOC546484, 6330411D24Rik, Prdm2, LOC666018, EG626575, LOC433776, Pdpn, Lrrc38, LOC621961, Pramel1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-058N12.T7 (MSMg01no058_n12.b1)MSMg01-058N12.TJ (MSMg01no058_n12.g1)
ACCAG285662AG285663
length719697
length of high quality
(start - end)
244 (71 - 314)300 (63 - 362)
definitionCHROMAT_FILE: MSMg01no058_n12.b1 PHD_FILE: MSMg01no058_n12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:01:12 2005CHROMAT_FILE: MSMg01no058_n12.g1 PHD_FILE: MSMg01no058_n12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:01:12 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(141,832,801 - 141,833,022)(141,992,814 - 141,993,109)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXNATCGAAGAGGAGCCGCGGAATTCT
TACATTACCTATAAGAGGTTGTGAATGGTGATAACACTTTCTCCATCTGT
TTAACTGGAGTTTATTCGCATTGCTCAGACTCCGCCAAAATTTTCAGTGC
TGGAGACACACCCCAGTGAATACAACATACAGTCCTCATGTAATGTACTA
ACAAAAGCGATCTGTACTGCTCATCATGCACACATAGGTTATAGTCTACA
CAGAAGCATGCACGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG
TGTGTGTGTGTGTGTTTTTTCGACAGCCTGTGAGTATATATGGTGTCTCC
CCATCTTTCCGTCTCCCCTTCCAGACTTGCTTACTCATTCCCATATCCGG
CGCGCGCTTTTAATTTTTGATACACAGAAATTTTACACATCACTCCATAC
ATATCCACCAACCCCTTCTATTACGCAATATTCTATTCCCGTTCCCTTTT
ATGTCCTCAGTGCTTGTAGGACTTAACCCCCCCCACCCTCGCCTTTACAA
TCTTCCTAAATAATAAAAACCCCGAAGTCTCCCCATTCACTATGACCCCC
GCACCTCAATTCCTTTATCAATTTCCTTACCCCCGCTCACAATATCGTAT
TTAAACAACAACCCACTTTTTATTACACAATTTACCCTTATTTTTTGCCA
TCACCCTTTTCCCTTTGGT
CATGTGCGTAGGCTGGCGGCCGCCTGGTCCTAAAATGGGGGTGAACTATA
GAATTTTCTGCGGAATTCTCTAGAGTCAATGTAATAATGCTAAGATTGAG
AGCTTATGCTGACTCAGAGAGATTATGGGACTTCCGGCCACTGGCATTTT
ACAGCCTCACAGGAAAGCTAGCCAAAATGGTTAGCTAGGTTAGGATGGTG
CCTATGTGACTTGCTGGCCAGGCTACAAGTATGTGGTCCTTTCTCCTGCA
CAGGTGGGTTCGTGAACAGTCTTCTCTGTGAGTTCTGAGATGATGATGCC
TTCCCTACAGGTCCTGTTAGGAATTAGAAATGATACAAAGAGGTTGACTC
AACAAAAGGCCCATGTTGTGTGGTGTATCATCGTGAAGTACATGTTGAAG
TGGTGGTGGGGGTTATCTAAGGTTGAGGCAATACCTTCAAACACCTGCAT
GTCCAGGTGAACTGGCCACAGGTACAGATGTGTGGCAGTGCCAGGGTTAG
TGACAACTGACCAGCTGCTGTCATGGTTAGCTTGATCATGGTGTGCCTGT
ATTTCGTCGGTGACTGGGAAGGAACCCCGCCCCCTGACACTCTGCGTGAC
GTCCAGCGCGTTAATAGGGATTTGAGGAAGGAACTGGCTGCCCTCTAATA
TACAGGCCCATCAGCCCCTGCTTGTCAGAATGTTTTACCTGCCTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no058_n12.b1 MSMg01no058_n12.b1 CHROMAT_FILE:
MSMg01no058_n12.b1 PHD_FILE: MSMg01no058_n12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:01:12 2005
         (244 letters)



>mm_chr4_141832601_141833244
          Length = 644

 Score =  414 bits (214), Expect = e-120
 Identities = 220/222 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gtgaatggtgataacactttctccatctgtttaactggagtttattcgcattgctcagac 60
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 201 gtgaatggtgataacactttctccatctgtttaactggagtttattagcattgctcagac 260

                                                                       
Query: 61  tccgccaaaattttcagtgctggagacacaccccagtgaatacaacatacagtcctcatg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tccgccaaaattttcagtgctggagacacaccccagtgaatacaacatacagtcctcatg 320

                                                                       
Query: 121 taatgtactaacaaaagcgatctgtactgctcatcatgcacacataggttatagtctaca 180
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 321 taatgtactaacaaaagcgatctgtactgctcatcatgcacacataagttatagtctaca 380

                                                     
Query: 181 cagaagcatgcacgtgtgtgtgtgtgtgtgtgtgtgtgtgtg 222
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cagaagcatgcacgtgtgtgtgtgtgtgtgtgtgtgtgtgtg 422


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 13
Number of successful extensions: 13
Number of sequences better than 10.0: 1
Number of HSP's gapped: 13
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space:   149225
Effective search space used:   149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no058_n12.g1 MSMg01no058_n12.g1 CHROMAT_FILE:
MSMg01no058_n12.g1 PHD_FILE: MSMg01no058_n12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:01:12 2005
         (300 letters)



>mm_chr4_141992614_141993309
          Length = 696

 Score =  534 bits (276), Expect = e-156
 Identities = 293/300 (97%), Gaps = 4/300 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   gaattctctagagtcaatgtaataatgctaagattgagagcttatgctgactcagagaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 gaattctctagagtcaatgtaataatgctaagattgagagcttatgctgactcagagaga 437

                                                                       
Query: 61  ttatgggacttccggccactggcattttacagcctcacaggaaagctagccaaaatggtt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 ttatgggacttccggccactggcattttacagcctcacaggaaagctagccaaaatggtt 377

                                                                       
Query: 121 agctaggttaggatggtgcctatgtgacttgctggccaggctacaagtatgtggtccttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 agctaggttaggatggtgcctatgtgacttgctggccaggctacaagtatgtggtccttt 317

                                                                       
Query: 181 ctcctgcacaggtgggttcgtgaacagtcttctctgtgagttctgagatgatgatgcctt 240
           ||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||
Sbjct: 316 ctcctgcacaggtgggttcgtgaacagtcttctctgtgagttctga---gatgatgcctt 260

                                                                       
Query: 241 ccctacaggtcctgttaggaattagaaatgatacaaagaggttgactcaacaaaaggccc 300
           |||||||||||| |  ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 259 ccctacaggtccag-gaggaattagaaatgatagaaagaggttgactcaacaaaaggccc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 300
Length of database: 696
Length adjustment: 9
Effective length of query: 291
Effective length of database: 687
Effective search space:   199917
Effective search space used:   199917
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)