MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	MSMg01-058P17
Chromosome	4 (Build37)
Map Location	142,259,706 - 142,260,276
singlet/doublet	singlet
Overlap gene	LOC546484
Upstream gene	Ddi2, Agmat, Dnajc16, Casp9, Ela2a, Ctrc, Efhd2, Fhad1, Tmem51, 9030409G11Rik, EG665983
Downstream gene	6330411D24Rik, Prdm2, LOC666018, EG626575, LOC433776, Pdpn, Lrrc38, LOC621961, Pramel1, 4732496O08Rik, Oog4, LOC666015, LOC626700, OTTMUSG00000010207, LOC100040854, LOC100040861, BC080695, LOC666049, LOC279185, LOC277668
Link	Open Mouse BAC browser

Click to get alignment info.

name	Ddi2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:68817 MGI:1917244
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Agmat (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:75986 MGI:1923236
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Dnajc16 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:214063 MGI:2442146
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Casp9 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:12371 MGI:1277950
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Ela2a (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:13706 MGI:95316
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Ctrc (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:76701 MGI:1923951
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Efhd2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:27984 MGI:106504
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Fhad1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:329977 MGI:1920323
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Tmem51 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:214359 MGI:2384874
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	9030409G11Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:71529 MGI:1918779
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	EG665983 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:665983 MGI:3644415
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST

name	LOC546484 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:546484
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 Protein pseudo : _no_value

name	6330411D24Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:70725 MGI:1917975
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST

name	Prdm2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:110593 MGI:107628
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC666018 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:666018
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 6 Proteins pseudo : _no_value

name	EG626575 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:626575 MGI:3646960
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 2 ESTs

name	LOC433776 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:433776
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 14 mRNAs, 850 ESTs, 2 Proteins

name	Pdpn (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:14726 MGI:103098
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Lrrc38 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:242735 MGI:2442845
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 mRNAs, 12 ESTs, 4 Proteins

name	LOC621961 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:621961
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 129 ESTs, 7 Proteins pseudo : _no_value

name	Pramel1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:83491 MGI:1890541
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	4732496O08Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:242736 MGI:2140473
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Oog4 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:242737 MGI:2684051
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC666015 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:666015
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 Proteins pseudo : _no_value

name	LOC626700 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:626700
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 24 Proteins pseudo : _no_value

name	OTTMUSG00000010207 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:545693 MGI:3649690
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100040854 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100040854
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 6 mRNAs, 12 ESTs, 54 Proteins

name	LOC100040861 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100040861
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 6 mRNAs, 12 ESTs, 55 Proteins

name	BC080695 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:329986 MGI:3525148
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC666049 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:666049
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 5 Proteins pseudo : _no_value

name	LOC279185 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:279185
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 ESTs, 37 Proteins

name	LOC277668 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:277668
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 20 ESTs, 28 Proteins

name	Ddi2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:77404398 GeneID:68817 MGI:1917244
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : DNA-damage inducible protein 2 transcript_id : NM_001017966.2

name	Agmat (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:124487168 GeneID:75986 MGI:1923236
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : agmatine ureohydrolase (agmatinase) transcript_id : NM_001081408.1

name	Dnajc16 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:133892867 GeneID:214063 MGI:2442146
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : DnaJ (Hsp40) homolog, subfamily C, member 16 transcript_id : NM_172338.2

name	Casp9 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118131034 GeneID:12371 MGI:1277950
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : caspase 9 transcript_id : NM_015733.4

name	Ela2a (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:133892984 GeneID:13706 MGI:95316
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : elastase 2A transcript_id : NM_007919.2

name	Ctrc (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:134053930 GeneID:76701 MGI:1923951
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : chymotrypsin C (caldecrin) transcript_id : NM_001033875.2

name	Efhd2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141803228 GeneID:27984 MGI:106504
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : EF hand domain containing 2 transcript_id : NM_025994.3

name	Fhad1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:50355932 GeneID:329977 MGI:1920323
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : forkhead-associated (FHA) phosphopeptide binding domain 1 transcript_id : NM_028429.1

name	Tmem51 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118130125 GeneID:214359 MGI:2384874
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : transmembrane protein 51 transcript_id : NM_145402.3

name	9030409G11Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:31542032 GeneID:71529 MGI:1918779
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 9030409G11 gene transcript_id : NM_144531.2

name	EG665983 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94372615 GeneID:665983 MGI:3644415
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST product : predicted gene, EG665983 transcript_id : XM_980711.1

name	Prdm2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:124486860 GeneID:110593 MGI:107628
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : PR domain containing 2, with ZNF domain transcript_id : NM_001081355.1

name	EG626575 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149253249 GeneID:626575 MGI:3646960
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 2 ESTs product : predicted gene, EG626575 transcript_id : XM_899431.3

name	LOC433776 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149253257 GeneID:433776
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 14 mRNAs, 850 ESTs, 2 Proteins product : similar to Eukaryotic translation elongation factor 2 transcript_id : XM_001475562.1

name	Pdpn (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:113462004 GeneID:14726 MGI:103098
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : podoplanin transcript_id : NM_010329.2

name	Lrrc38 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94372710 GeneID:242735 MGI:2442845
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 mRNAs, 12 ESTs, 4 Proteins product : leucine rich repeat containing 38 transcript_id : XM_144076.5

name	Pramel1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:13878196 GeneID:83491 MGI:1890541
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : preferentially expressed antigen in melanoma-like 1 transcript_id : NM_031377.1

name	4732496O08Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142375940 GeneID:242736 MGI:2140473
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 4732496O08 gene transcript_id : NM_172877.2

name	Oog4 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:30424638 GeneID:242737 MGI:2684051
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : oogenesin 4 transcript_id : NM_173773.1

name	OTTMUSG00000010207 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118131175 GeneID:545693 MGI:3649690
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : predicted gene, OTTMUSG00000010207 transcript_id : NM_001039595.2

name	LOC100040854 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149253251 GeneID:100040854
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 6 mRNAs, 12 ESTs, 54 Proteins product : similar to Predicted gene, OTTMUSG00000010207 transcript_id : XM_001476396.1

name	LOC100040861 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149253253 GeneID:100040861
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 6 mRNAs, 12 ESTs, 55 Proteins product : similar to Predicted gene, OTTMUSG00000010207 transcript_id : XM_001476412.1

name	BC080695 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142371044 GeneID:329986 MGI:3525148
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : cDNA sequence BC080695 transcript_id : NM_001007579.2

name	LOC279185 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149253261 GeneID:279185
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 ESTs, 37 Proteins product : hypothetical LOC279185 transcript_id : XM_205435.7

name	LOC277668 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:94372716 GeneID:277668
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 18 ESTs, 28 Proteins product : similar to Predicted gene, OTTMUSG00000010433 transcript_id : XM_204040.4

name	Ddi2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:63003917 CCDS:CCDS18880.1 GeneID:68817 MGI:1917244
definition	codon_start : 1 product : DNA-damage inducible protein 2 protein_id : NP_001017966.1

name	Agmat (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:124487169 GeneID:75986 MGI:1923236
definition	GO_function : GO:0016813 - hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidines [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA] codon_start : 1 product : agmatine ureohydrolase (agmatinase) protein_id : NP_001074877.1

name	Dnajc16 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:27261818 CCDS:CCDS18882.1 GeneID:214063 MGI:2442146
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0031072 - heat shock protein binding [Evidence IEA]; GO:0051082 - unfolded protein binding [Evidence IEA] GO_process : GO:0006457 - protein folding [Evidence IEA] codon_start : 1 product : DnaJ (Hsp40) homolog, subfamily C, member 16 protein_id : NP_758841.1

name	Casp9 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31560479 CCDS:CCDS18883.1 GeneID:12371 MGI:1277950
definition	GO_component : GO:0005829 - cytosol [Evidence IDA]; GO:0005634 - nucleus [Evidence IDA]; GO:0005625 - soluble fraction [Evidence IDA] GO_function : GO:0030693 - caspase activity [Evidence IDA]; GO:0008234 - cysteine-type peptidase activity [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]; GO:0008233 - peptidase activity [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI] codon_start : 1 product : caspase 9 protein_id : NP_056548.2

name	Ela2a (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6681297 CCDS:CCDS18884.1 GeneID:13706 MGI:95316
definition	GO_function : GO:0016787 - hydrolase activity [Evidence IEA]; GO:0004281 - pancreatic elastase II activity [Evidence IEA]; GO:0008233 - peptidase activity [Evidence IEA]; GO:0004252 - serine-type endopeptidase activity [Evidence IEA] GO_process : GO:0006508 - proteolysis [Evidence IEA] codon_start : 1 note : neutrophilic elastase product : elastase 2 protein_id : NP_031945.1

name	Ctrc (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:76443665 GeneID:76701 MGI:1923951
definition	GO_component : GO:0005575 - cellular_component [Evidence ND] GO_function : GO:0004263 - chymotrypsin activity [Evidence ISS]; GO:0016787 - hydrolase activity [Evidence IEA]; GO:0008233 - peptidase activity [Evidence IEA]; GO:0004252 - serine-type endopeptidase activity [Evidence IEA] GO_process : GO:0006874 - calcium ion homeostasis [Evidence ISS]; GO:0006508 - proteolysis [Evidence ISS] [Evidence IEA] codon_start : 1 exception : unclassified translation discrepancy product : chymotrypsin C (caldecrin) protein_id : NP_001029047.1

name	Efhd2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31981086 CCDS:CCDS18885.1 GeneID:27984 MGI:106504
definition	GO_function : GO:0005509 - calcium ion binding [Evidence IEA] codon_start : 1 product : EF hand domain containing 2 protein_id : NP_080270.2

name	Fhad1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:50355933 GeneID:329977 MGI:1920323
definition	codon_start : 1 product : forkhead-associated (FHA) phosphopeptide binding domain 1 protein_id : NP_082705.1

name	Tmem51 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21703804 CCDS:CCDS18886.1 GeneID:214359 MGI:2384874
definition	GO_component : GO:0016020 - membrane [Evidence IEA] codon_start : 1 product : transmembrane protein 51 protein_id : NP_663377.1

name	9030409G11Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31542033 CCDS:CCDS18887.1 GeneID:71529 MGI:1918779
definition	GO_component : GO:0001533 - cornified envelope [Evidence ISS]; GO:0030057 - desmosome [Evidence ISS] codon_start : 1 exception : mismatches in translation product : hypothetical protein LOC71529 protein_id : NP_653114.2

name	EG665983 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:94372616 GeneID:665983 MGI:3644415
definition	codon_start : 1 product : hypothetical protein protein_id : XP_985805.1

name	Prdm2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:124486861 GeneID:110593 MGI:107628
definition	GO_component : GO:0005622 - intracellular [Evidence IEA]; GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0003676 - nucleic acid binding [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] codon_start : 1 product : PR domain containing 2, with ZNF domain protein_id : NP_001074824.1

name	EG626575 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:82895635 GeneID:626575 MGI:3646960
definition	codon_start : 1 product : hypothetical protein protein_id : XP_904524.1

name	LOC433776 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149253258 GeneID:433776
definition	codon_start : 1 product : similar to Eukaryotic translation elongation factor 2 protein_id : XP_001475612.1

name	Pdpn (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:113462005 GeneID:14726 MGI:103098
definition	GO_component : GO:0030175 - filopodium [Evidence IDA]; GO:0016021 - integral to membrane [Evidence IEA]; GO:0030027 - lamellipodium [Evidence IDA]; GO:0016020 - membrane [Evidence IEA]; GO:0005886 - plasma membrane [Evidence IDA]; GO:0001726 - ruffle [Evidence IDA] GO_function : GO:0015171 - amino acid transporter activity [Evidence IDA]; GO:0008517 - folic acid transporter activity [Evidence IDA]; GO:0015250 - water channel activity [Evidence IDA]; GO:0005372 - water transporter activity [Evidence IDA] GO_process : GO:0006865 - amino acid transport [Evidence IDA]; GO:0007155 - cell adhesion [Evidence ISS]; GO:0007275 - development [Evidence IEA]; GO:0015884 - folic acid transport [Evidence IDA]; GO:0030324 - lung development [Evidence IMP]; GO:0001946 - lymphangiogenesis [Evidence IMP]; GO:0030335 - positive regulation of cell migration [Evidence ISS]; GO:0051272 - positive regulation of cell motility [Evidence IDA]; GO:0008360 - regulation of cell shape [Evidence IEA]; GO:0035239 - tube morphogenesis [Evidence ISS]; GO:0006833 - water transport [Evidence IDA] codon_start : 1 note : Aggrus; glycoprotein 38 product : podoplanin protein_id : NP_034459.2

name	Lrrc38 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:38078948 GeneID:242735 MGI:2442845
definition	codon_start : 1 product : similar to Lrrc38 protein protein_id : XP_144076.2

name	Pramel1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:13878197 CCDS:CCDS18888.1 GeneID:83491 MGI:1890541
definition	codon_start : 1 product : preferentially expressed antigen in melanoma-like 1 protein_id : NP_113554.1

name	Oog4 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:30424639 CCDS:CCDS18890.1 GeneID:242737 MGI:2684051
definition	GO_component : GO:0005575 - cellular_component [Evidence ND] GO_function : GO:0003674 - molecular_function [Evidence ND] GO_process : GO:0008150 - biological_process [Evidence ND] codon_start : 1 product : oogenesin 4 protein_id : NP_776134.1

name	OTTMUSG00000010207 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:88853565 CCDS:CCDS18891.1 GeneID:545693 MGI:3649690
definition	codon_start : 1 note : novel protein similar to the preferentially expressed antigen in melanoma like (Pramel) family product : hypothetical protein LOC545693 protein_id : NP_001034684.1

name	LOC100040854 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149253252 GeneID:100040854
definition	codon_start : 1 product : similar to Predicted gene, OTTMUSG00000010207 protein_id : XP_001476446.1

name	LOC100040861 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149253254 GeneID:100040861
definition	codon_start : 1 product : similar to Predicted gene, OTTMUSG00000010207 protein_id : XP_001476462.1

name	BC080695 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:56090469 GeneID:329986 MGI:3525148
definition	codon_start : 1 note : novel protein similar to the preferentially expressed antigen in melanoma like (Pramel) family product : hypothetical protein LOC329986 protein_id : NP_001007580.1

name	LOC279185 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149253262 GeneID:279185
definition	codon_start : 1 product : hypothetical protein protein_id : XP_205435.5

name	LOC277668 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:28498570 GeneID:277668
definition	codon_start : 1 product : similar to Predicted gene, OTTMUSG00000010433 protein_id : XP_204040.2

name	LOC546484 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:546484
definition	number : 2 pseudo : _no_value

name	LOC546484 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:546484
definition	number : 1 pseudo : _no_value

name	LOC666018 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:666018
definition	number : 1 pseudo : _no_value

name	LOC666015 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:666015
definition	number : 4 pseudo : _no_value

name	LOC666015 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:666015
definition	number : 3 pseudo : _no_value

name	LOC666015 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:666015
definition	number : 2 pseudo : _no_value

name	LOC666015 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:666015
definition	number : 1 pseudo : _no_value

name	LOC626700 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:626700
definition	number : 1 pseudo : _no_value

name	LOC626700 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:626700
definition	number : 2 pseudo : _no_value

name	LOC626700 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:626700
definition	number : 3 pseudo : _no_value

name	6330411D24Rik (CDS detail)
type	misc_RNA
link	vega ensembl MGI NCBI
xref	GI:94372712 GeneID:70725 MGI:1917975
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST product : RIKEN cDNA 6330411D24 gene, transcript variant 2 transcript_id : XR_002341.1

name	LOC621961 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149253250 GeneID:621961
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 129 ESTs, 7 Proteins product : similar to Anp32b protein pseudo : _no_value transcript_id : XR_032654.1

name	LOC666049 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149253260 GeneID:666049
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 5 Proteins product : hypothetical LOC666049 pseudo : _no_value transcript_id : XR_032359.1

clone name	MSMg01-479J14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-345C24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-269K02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-483L18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-544M10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-406D14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-180H18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-084J15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-171B18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-299M02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-313O09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-076D13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-341K13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-153K08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-385F04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-090L02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-202J02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-469O22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-403G13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-530B03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-288L12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-304M01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-092H02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-264H20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-267P15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-297E06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-333H15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-058N12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-066E16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-367D11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-353F19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-382B10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-475M22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-430M16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-275C17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-149A06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-428I13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-056E15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-272K11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-272J11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-109M15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-058P17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-098N08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-158N06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-193D09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-355N24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-515D13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-431K22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-101G01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-463F23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-300C03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-389A01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-155D18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-523L03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-143D24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-115B06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-115A16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-266L03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-387G22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-266L07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-083M06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-376K14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-087O10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-333E02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-313C23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-175M21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-180K23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-527E22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-535L10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-180P18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-180H07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-398E14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-296O23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-327A13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-276L21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-231P05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-407M24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-154M22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-060I21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-269J22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-473E21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-180P10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-354I04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-367O20
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-347J12
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-482E15
singlet/doublet	doublet
plural/unique	plural

clone name	B6Ng01-164N15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-260G05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-294B12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-026I07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-268J09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-085E08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-290G15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-134N06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-201F16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-311F09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-182A21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-204B02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-190E05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-338A08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-190J10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-108J02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-247O06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-103I24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-071F13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-275C14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-016P19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-053D24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-064M12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-113A06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-091L07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-069H01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-117G03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-325M05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-237K12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-010L18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-030A04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-160H07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-042K05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-255G20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-297N20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-307O13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-076I24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-290K20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-160F01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-093E09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-168I09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-254J13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-034C01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-158A19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-102O22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-055O03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-199N01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-131B24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-323K14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-304D11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-029N01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-063L19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-053H20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-013G02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-230M05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-179J14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-242P13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-290I14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-147C19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-110C18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-256A24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-187F18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-081P18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-327F12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-113J17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-314N18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-095M19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-118F04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-296J21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-162K14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-044B09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-146C01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-135B12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-319C17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-010D01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-002G17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-234H08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-147D07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-107C03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-124L04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-138C23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-249H19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-116F22
singlet/doublet	doublet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	MSMg01-058P17.T7 (MSMg01no058_p17.b1)	MSMg01-058P17.TJ (MSMg01no058_p17.g1)
ACC	AG285768	AG285769
length	699	728
length of high quality (start - end)	629 (71 - 699)	295 (80 - 374)
definition	CHROMAT_FILE: MSMg01no058_p17.b1 PHD_FILE: MSMg01no058_p17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:01:22 2005	CHROMAT_FILE: MSMg01no058_p17.g1 PHD_FILE: MSMg01no058_p17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:01:22 2005
singlet/doublet	singlet	---
BLAST hit	unique	no hit data
sequence	CTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC GGAATTCCACATTCCCGAAGGAAATGGTTTATGGTGCTACTTTATAGTTT ATGACGCCCAGGAGAAGGTGAACAGCCCCTCTGCCTCTGTCAGTCTCATC AGCATCAGTAAGAACTGACTTCCTGAAAATATATTATGTGCTGGGAAGAC TCAGACACCCAGGAGACATGGTTCTTGACCTCCAAATAGGATCACATTCT GAAAAAGAGAAGCACGTGTGCACGTGCGCACATGCGTGTGCGTGCGCGCA TGCGTACATACGCACATGCACTCTCACTCACGGACGCACACAGCAAAGAA CAGGAGGATTTCTCTGGGAGGGAGGCATGTGCCTCATGAAAGATGCAAGT GGTGTTTCTCGAAGGCAGTGGGCCTGAAATACACAGAAATGAAGGCTTTT GTAAACGAAGTTAGATTTTAAATGCATGAGAGGAGCCAACTGTTTAAAGG AAACTGGCAGAGAACTGCTCTCCCTCACTCAAAAAAAAAAAAATTAACTT AGCAATGACAATAACCATCGTCTCATTTATCGACCTTATTAGCATCAATT TTTTTTCATTTTAGTAGATTTGGGGGATCTGAAAATGCAGTACAGAGGAC CTCTCCACATTCTTACTTTGGGAAAAGCAAATGACAACATTGTCTCTGA	NCCATTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGTTCACAGTCTTGGTGGGCA CATGAAAAAGTGGTCTCGTGGCCTTCAGCCCCCCTTTTCCAAAAAAGGAT TCATTTATTTTTATGTGTATGAATGGGTTGCCTGTATATATGTATGTATG TATGTATGTATGTATGTATGTATGTATGTATGTATGTATGCCATGTGAGT GCTCAGTGACCTCAGAGGTCTGAAGAGGGTGTCAAGTTCCTTGGAACTGG AGTTACAGGTGATTATGATCATATTTACAGGTGCTCAATAAGGTGCTTGC TTTGCAGCCCCAGCGATATCACCTCAAAACAAAGCCAGGTCAGTGAGAGA GCAACATCAAGACACACACACACACACACACACACACACACACACACACA TATACACACACACACATAGTCCTGGTAGGTGAGGATAATCTCCATATATA TTAATTCCATTTTTCAACTTCATTTCTTCTTTTTTCTTACTTCTATTCTA TATTTTTTTTATTCCTCTCTCAACTTTTTTATCCTTCTCACACAACGCGC AATACATACAATTCACACCTTCTCTCTCACCCCTCCCCCACCCTTTTATC TCCTAATATCGGGTCACTATTTATTTATTCTCGCATTTTTCTTTCTTTTT TTTTACTTTTTATCCTTCTCTCTCATAG
quality values	Open. Hide. 7 8 10 10 8 8 8 8 8 23 26 39 33 32 30 28 28 28 30 30 30 33 33 37 37 40 47 28 25 29 19 18 9 9 9 13 9 12 12 12 19 19 22 22 28 28 28 31 59 53 53 36 36 36 31 33 32 32 22 13 15 9 12 11 11 11 11 17 17 20 22 22 27 30 33 33 36 44 57 53 57 57 57 57 59 57 59 59 59 59 59 59 57 53 53 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 50 57 42 40 39 39 29 25 10 8 8 10 10 12 24 44 59 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 59 59 57 57 57 57 68 68 68 68 68 68 68 68 68 68 68 50 51 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 57 57 57 57 57 68 68 68 68 57 57 57 57 57 68 68 68 68 68 68 68 59 59 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 62 68 62 62 62 62 62 62 62 62 62 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 62 62 62 62 39 39 13 13 12 12 12 39 39 43 52 62 62 62 62 62 62 68 68 68 62 62 62 62 62 62 62 62 62 62 62 62 62 62 68 68 68 62 62 62 43 43 38 43 39 39 39 43 39 39 29 23 13 23 13 17 19 29 39 35 39 39 43 43 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 68 68 68 62 62 62 62 62 62 62 62 62 62 68 62 62 62 62 62 52 52 52 52 52 43 43 41 43 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 52 62 62 62 62 68 62 62 57 57 57 57 57 57 59 59 57 57 57 57 57 57 59 59 57 57 59 57 45 45 57 57 57 57 57 57 57 57 57 52 52 52 57 57 57 52 52 57 57 59 57 57 57 57 57 57 57 57 44 44 33 35 35 50 50 57 57 57 57 57 59 59 59 57 57 57 57 47 43 35 32 43 43 52 52 59 59 68 68 59 57 57 57 57 57 57 59 48 43 47 35 42 59 59 59 57 57 57 54 54 54 57 57 68 57 57 57 57 57 57 57 57 57 47 54 54 57 57 68 57 53 50 48 48 47 47 48 48 47 47 44 48 43 46 46 48 48 48 54 57 68 68 59 59 48 48 39 39 39 43 34 47 42 39 39 30 30 30 39 39 48 48 48 46 37 37 37 37 37 19 9 9 9 9 18 22 37 32 30 33 37 43 41 41 41 41 39 37 37 31 31 37 37 37 37 33 33 30 28 28 37 35 36 37 37 37 30 30 28 28 23 25 31 25 25 22 28 24 28 23 28 28 23 19 18 15 18 24 28 30 30 21 28 28 28 30 28 27 24	Open. Hide. 0 3 8 8 8 8 8 8 8 9 12 23 26 11 11 18 30 33 57 47 39 43 43 43 43 41 41 41 41 23 23 11 12 10 12 11 6 6 6 6 7 6 13 13 22 20 25 24 30 39 44 44 47 47 41 41 37 37 34 23 10 8 11 9 8 8 11 9 9 9 19 19 28 17 18 28 28 30 31 47 47 36 36 50 50 36 37 47 47 57 59 59 57 59 59 59 57 57 54 54 54 43 43 47 57 68 68 57 54 54 54 54 54 57 57 57 57 57 57 59 59 44 41 36 32 27 32 32 54 59 59 59 68 68 68 68 59 51 50 50 50 68 68 68 68 68 50 50 48 48 48 48 57 57 57 57 68 68 68 68 68 68 57 57 57 57 57 57 57 57 57 57 57 57 57 57 59 52 59 59 59 59 59 59 59 57 68 68 68 68 68 57 57 57 57 57 57 57 59 59 59 59 59 59 59 59 59 57 57 57 59 59 68 68 68 68 68 68 68 68 68 57 57 57 57 57 57 57 57 57 59 57 57 57 57 52 52 52 57 57 57 59 59 59 57 57 43 43 37 37 43 52 43 44 27 27 24 43 43 52 52 43 43 32 23 23 38 44 52 57 59 59 59 38 35 35 43 43 44 48 50 43 50 43 43 43 44 44 50 59 59 57 43 43 37 43 43 57 43 43 43 43 43 57 57 48 44 36 32 24 24 33 32 35 43 30 32 12 12 11 13 8 8 10 12 8 10 11 12 15 24 30 43 46 40 42 39 42 42 48 43 43 43 43 43 42 40 43 43 39 39 37 37 28 28 34 36 34 34 25 21 13 13 13 15 18 28 34 27 19 15 14 12 22 19 14 14 14 21 21 24 24 23 23 23 23 23 24 23 28 28 28 33 36 39 39 35 28 24 20 20 20 20 28 28 32 34 40 25 25 30 30 30 30 28 37 29 33 25 25 18 25 19 28 28 28 28 32 30 28 21 15 14 28 28 18 18 13 13 13 13 15 22 20 16 10 9 9 12 10 10 10 10 12 23 21 19 15 13 13 13 24 17 20 12 10 10 10 10 8 8 8 8 8 8 8 8 8 8 9 9 8 10 6 6 8 6 9 9 11 12 10 8 8 6 8 6 6 8 8 9 9 10 10 10 10 8 8 8 8 8 8 10 10 16 11 11 9 8 8 8 8 8 8 8 8 8 8 8 10 11 18 10 12 12 16 10 9 8 8 8 8 6 6 8 8 8 8 8 8 8 9 9 11 11 11 12 9 9 11 15 15 10 9 8 10 8 8 8 8 8 8 8 8 8 8 8 10 10 10 12 8 8 8 8 10 11 11 10 8 8 8 8 8 10 10 11 7 8 8 8 8 8 8 8 8 8 10 8 8 8 8 8 8 8 8 10 10 8 8 8 8 8 8 8 6 6 8 8 10 10 9 9 9 9 10 9 6 6 8 8 8 8 11 8 8 8 8 8 8 8 8 8 8 8 8 8 8 10 10 8 8 8 10 12 7 7 8 10 8 8 8 8 8 8 10 10 13 8 8 8 8 8 8 10 9 12 10 8 8 8 8 10 9 9 10 10 13 13 31 16 16 8 8 6 6 8 8 15 10 10 10 10 10 10 16 8 8 7 7 8 8 8 8 8 8 7 7

Alignment Information

BAC End 1

BAC End 2

Query= MSMg01no058_p17.b1 MSMg01no058_p17.b1 CHROMAT_FILE:
MSMg01no058_p17.b1 PHD_FILE: MSMg01no058_p17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:01:22 2005
         (629 letters)



>mm_chr4_142259252_142260276
          Length = 1025

 Score = 1031 bits (533), Expect = 0.0
 Identities = 563/575 (97%), Gaps = 4/575 (0%)
 Strand = Plus / Minus

                                                                        
Query: 55   gcccctctgcctctgtcagtctcatcagcatcagtaagaactgacttcctgaaaatatat 114
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1025 gcccctctgcctctgtcagtctcatcagcatcagtaagaactgacttcctgaaaatatat 966

                                                                        
Query: 115  tatgtgctgggaagactcagacacccaggagacatggttcttgacctccaaataggatca 174
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 965  tatgtgctgggaagactcagacacccaggagacatggttcttgacctccaaataggatca 906

                                                                        
Query: 175  cattctgaaaaagagaagcacgtgtgcacgtgcgcacatgcgtgtgcgtgcgcgcatgcg 234
            |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 905  cattctgaaaaagagaagcacgtgtgcacgtgcgcacatgcgtgtgcgcgcgcgcatgcg 846

                                                                        
Query: 235  tacatacgcacatgcactctcactcacggacgcacacagcaaagaacaggaggatttctc 294
            ||||||||||||||||| | |||||||||||||||||||||||| |||||||||||||||
Sbjct: 845  tacatacgcacatgcacacgcactcacggacgcacacagcaaagtacaggaggatttctc 786

                                                                        
Query: 295  tgggagggaggcatgtgcctcatgaaagatgcaagtggtgtttctcgaaggcagtgggcc 354
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 785  tgggagggaggcatgtgcctcatgaaagatgcaagtggtgtttctcgaaggcagtgggcc 726

                                                                        
Query: 355  tgaaatacacagaaatgaaggcttttgtaaacgaagttagattttaaatgcatgagagga 414
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 725  tgaaatacacagaaatgaaggcttttgtaaacgaagttagattttaaatgcatgagagga 666

                                                                        
Query: 415  gccaactgtttaaaggaaactggcagagaactgctctccctcactcaaaaaaaaaaaaat 474
            |||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
Sbjct: 665  gccaactgtttaaaggaaactggcagagaactgctctccctcacccaaaaaaaaaa---- 610

                                                                        
Query: 475  taacttagcaatgacaataaccatcgtctcatttatcgaccttattagcatcaatttttt 534
            | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609  tcacttagcaatgacaataaccatcgtctcatttatcgaccttattagcatcaatttttt 550

                                                                        
Query: 535  ttcattttagtagatttgggggatctgaaaatgcagtacagaggacctctccacattctt 594
            || |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 549  tttattttagtagatttgggggatctgaaaatgcagtacagaggacctctccacattgtt 490

                                               
Query: 595  actttgggaaaagcaaatgacaacattgtctctga 629
            |||||||||||||||||||||||||||||||||||
Sbjct: 489  actttgggaaaagcaaatgacaacattgtctctga 455


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 629
Length of database: 1025
Length adjustment: 10
Effective length of query: 619
Effective length of database: 1015
Effective search space:   628285
Effective search space used:   628285
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information