BAC Information

Click to search

BAC

Clone NameMSMg01-059G23
Chromosome4 (Build37)
Map Location 27,460,810 - 27,461,193
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneLOC100040691, Tpm3-rs2, LOC100040842, LOC100040735, LOC230044, LOC665141
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-059G23.T7 (MSMg01no059_g23.b1)MSMg01-059G23.TJ (MSMg01no059_g23.g1)
ACCAG286114AG286115
length716711
length of high quality
(start - end)
588 (52 - 639)622 (79 - 700)
definitionCHROMAT_FILE: MSMg01no059_g23.b1 PHD_FILE: MSMg01no059_g23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:01:56 2005CHROMAT_FILE: MSMg01no059_g23.g1 PHD_FILE: MSMg01no059_g23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:01:56 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GGAATCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAGAGAGAG
CGCGGAATTCTCACCTGATGCATACCGAATGGCAGAGAAGTACCTGAGAT
TATTATTCTTGATAGCTTTGTATACATATCACATGTTGCCTTAGTTTGAA
CTTCCATTTCCAAAGTAAATATTGTTAAAAAAAAAAAAAACAACATTTAA
TTGGGGCTGTCTTAGTGTTTCAGAGGCTCAGCCCATTATCATGGTGAGAA
GAACAGTAGTGTACAGGCAGACATGGTCTAATGTCTTGATCAGCAGGAGA
TTGGATTTCATACTTGCTACAACAAGGACACACCTCCTAATAGTACATTC
CTCAGAGGCCAAGAATTTATTCACATGAATATATGGGGGAGGGGCAAACC
TATTAAAGTGACCACACGTGTTAAAGATAAAGCAAAGGAATAGATACTAA
GTTTTTAATTAAAATTTGAATTTTTAAAATAGTTTTCACAGAATTGTTTG
TTTAGGGAGCAAGTGCATTATTAAATAAAGTATTAACTGCATATACACAA
TGACCATGCAAATACTGCTTGAGTAGGTTAGGAGTGTTCCTAAAAAACAA
TTTTTTTTTTTTTTAGGTTTTTTGAGACAGGTTTTCTCAGTATAGCACAG
GCTATCCTGGAACTCACTTTGTAGACCAGGCTGGCCTCGAACTCAGAAAT
ATGCCTACCTCTGCCT
AAACCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCTTCACTCGGACTGTGCGTTTC
TTCTGTGATTTGCACCTATTGGGCATATCCTATTTCTTACTTATACTGTC
AAAACTTTCTCTGATTCATCGCTTTATCTACCCATCAATTAGACATTATT
GTTTAGAAGTAAAGGGGCATACTAAATGATTTCAGCCAGAGGGATGACAG
GTGTGAACTAAGGACATGGGCATGTCTTTATTCTAGCCACATCATATGGC
CCAGCCCGCGGGACAATCGAACATCATCAGAGGAACCACCTGTGGAGAGA
ATGGGGGACAAGAAACACAAAAACTGGACAGCAAGTCTGATTGATCAAGC
TGACAAATTTTATCTTTCCCAGGCAGGTTTTATACCCCTAGAAGCAGGAT
ATGGGGAGGGGAATAACGCAGAATCACTTTGTTTCTGGGGGAATGCACCT
GTTCCCAAAAGCAGGATATTGGCTAGGTAAAAAGTTCAGCAGGAGGAACA
GAACAGAGTGGGTTGCTAGGTACCTGTCCACAAGATCTATACGCTATTTG
TTCTTAACTGGGGATAGTACTTTTCTACAGAGTCCTGAACAATTACGACA
CAAATCTCAACTAAGCCAGTACTTTTCTACTAAGACCAAGACTTTGTAAA
TAAACACTTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no059_g23.b1 MSMg01no059_g23.b1 CHROMAT_FILE:
MSMg01no059_g23.b1 PHD_FILE: MSMg01no059_g23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:01:56 2005
         (588 letters)



>mm_chr4_27460205_27461193
          Length = 989

 Score =  522 bits (270), Expect = e-152
 Identities = 339/384 (88%), Gaps = 36/384 (9%)
 Strand = Plus / Minus

                                                                       
Query: 240 cagcaggagattggatttcatacttgctacaacaaggacacacctcctaatagtacattc 299
           |||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 989 cagcaggagactggatttcatacttgctacaacaaggacacatctcctaatagtacattc 930

                                                                       
Query: 300 ctcagaggccaagaatttattcacatgaatatatgggggaggggcaaacctattaaagtg 359
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 929 ctcagaggccaagaatttattcacatgaatatacgggggaggggcaaacctattaaagtg 870

                                                                       
Query: 360 accacacgtgttaaagataaagcaaaggaatagatactaagtttttaattaaaatttgaa 419
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 869 accacacgtgttaaagataaagcaaaggaatagatactatgtttttaattaaaatttgaa 810

                                                                       
Query: 420 tttttaaaatagttttcacagaattgtttg--ttta-----------gggagcaagtgca 466
           ||||||||||||||| |||| |||||||||  ||||           |||||||||||||
Sbjct: 809 tttttaaaatagtttccacacaattgtttggttttacttatgatctagggagcaagtgca 750

                                                                       
Query: 467 ttattaaataaagtattaactgcatatacacaatgaccatgcaaatactgcttgagtagg 526
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 749 ttattaaataaagtattaactgcatatacacaatgaccatgcaaatactgcttgagtagg 690

                                                                       
Query: 527 ttaggagtgttcctaaaaaacaat-----------------------ttttttttttttt 563
           ||||| |||||||| |||||||||                       |||||||||||||
Sbjct: 689 ttaggtgtgttcctgaaaaacaatgttttttgttttttgttttgtttttttttttttttt 630

                                   
Query: 564 aggttttttgagacaggttttctc 587
            |||||||||||||||||||||||
Sbjct: 629 tggttttttgagacaggttttctc 606


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 588
Length of database: 989
Length adjustment: 10
Effective length of query: 578
Effective length of database: 979
Effective search space:   565862
Effective search space used:   565862
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)