AATCATXXXXXXXXXXXXXXXXXXXXXXXCTATTCCAAGAGGAGCGCGGA
ATTCTTTACATTACAAATCACTTTGCATTTTGATACTAGCCTTCCTCGTC
TTTTCAAAATCTTTCACGGAATCATATTTTCTGTAGAAATCTGCATATGC
CCTCTTTCTTGGTTCAGCCACACCAAATTTACAGGAAACTGCAACTCCCA
GGGCCACCATGAACCAACAGTATGACCCTGCAGACGCTTGGCCTGAGGAC
CATGTAGCTGAGGCTTCACCAATACACTGGAAGTTATGGTAGTGAGTGTC
CACTAAGGCAGTGTCCTTCCCAGTTCTCTGAGAAGTGGAGAGCCTCGGGT
CTCACTGTGTACAGTACGATCAGTGTCAGATCTTACCATTTCCAGGGCCT
CTTGAAATCTGCTTTTACTTGGAGCATCTGCTCCATTTGCTTTAGAATTT
ACTACTTTAAACTTTTCCTCTTTTTCCTTTCCTTTCCTTTCCTTTCCTTT
CCTTTCCTTTCCTTTCCTTTCCTTTCCTTTCCTTTCCTTTCCTTTCCTTT
CCTTTCCTTTCCTTTCCTTTCCTTTCCATTCTTCTCCCCTTCCCCTCCCC
TCTATTCTCCTCCTTCCTTGTTCTCTTCCTTCCCATCCTCCTCACACCCC
ATCACCTTCATCTTCCTATTTATTCTATTATATCACTACTCTC

NCCATGACTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTGGTCCTTCTCTGCTGGATGGAACTCTGG
CGGGGGAGGGGAGCGATGGGGAGAGGGGCGTGGCAGGGCAGGGTGGGGCG
GGGAAGCCAAGGAAGATGGCACGTGGAGGACAAGTAGAGAGATAGGTGAA
GGTACTTAGAGACATCAGAAGGGATGCAGTGGCATCAGAACCTCAGATAT
CCACTCTGAGCAGACACTAATGGACGACTGGCCCCCAAATGTGGTCCCTG
TCCTCTGACAACCACTTTTTTTGCTTGGCCAGGCTAGCAGGTGGGGAATG
GGGTGGTGCTTCGCCCGCTCATCCTTCTTTTTGGTAATACTTCCTTATGA
TTATTCTCTTGCCCCCCCCATGATATAGTCTCTTTTGTCCTTCCCCTTTT
CCCTTTTCTCTCTTCTCCTCTCCTCCTCCTTCCTCCCTCCTTTTCCCTTT
TCTCTTTCTCGTTTCCCTGCATCTTCTCTATTCTTTCTTTCCTCTTTTAC
GTCCTTTCTTTCCTTCCTTCTTTCCTTTTTTCCTGTTTACCTCTTTCTTC
TTTCTTTTCCTCTTTTTTCTCTTCTCCTTTCTTCTTTTCCTTTTTCCCTT
CCTCCCCTCTCCTTTCCTGCTCTCCCTTCCTCTCCCTTTCCTTTTCCTCC
TCTTTCTTTCTTTTTCTCTCCTA

Query= MSMg01no059_j16.b1 MSMg01no059_j16.b1 CHROMAT_FILE:
MSMg01no059_j16.b1 PHD_FILE: MSMg01no059_j16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:02:09 2005
         (512 letters)



>mm_chr4_106447030_106447941
          Length = 912

 Score =  920 bits (476), Expect = 0.0
 Identities = 494/500 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   atcactttgcattttgatactagccttcctcgtcttttcaaaatctttcacggaatcata 60
           ||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||
Sbjct: 606 atcactttgcattttgatactagccttcctcatctcttcaaaatctttcacggaatcata 547

                                                                       
Query: 61  ttttctgtagaaatctgcatatgccctctttcttggttcagccacaccaaatttacagga 120
           |||||||||||||||||||||| || |||||||||||||||||| |||||| ||||||||
Sbjct: 546 ttttctgtagaaatctgcatataccttctttcttggttcagccataccaaacttacagga 487

                                                                       
Query: 121 aactgcaactcccagggccaccatgaaccaacagtatgaccctgcagacgcttggcctga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 aactgcaactcccagggccaccatgaaccaacagtatgaccctgcagacgcttggcctga 427

                                                                       
Query: 181 ggaccatgtagctgaggcttcaccaatacactggaagttatggtagtgagtgtccactaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 ggaccatgtagctgaggcttcaccaatacactggaagttatggtagtgagtgtccactaa 367

                                                                       
Query: 241 ggcagtgtccttcccagttctctgagaagtggagagcctcgggtctcactgtgtacagta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 ggcagtgtccttcccagttctctgagaagtggagagcctcgggtctcactgtgtacagta 307

                                                                       
Query: 301 cgatcagtgtcagatcttaccatttccagggcctcttgaaatctgcttttacttggagca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 cgatcagtgtcagatcttaccatttccagggcctcttgaaatctgcttttacttggagca 247

                                                                       
Query: 361 tctgctccatttgctttagaatttactactttaaacttttcctctttttcctttcctttc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 tctgctccatttgctttagaatttactactttaaacttttcctctttttcctttcctttc 187

                                                                       
Query: 421 ctttcctttcctttcctttcctttcctttcctttcctttcctttcctttcctttcctttc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 186 ctttcctttcctttcctttcctttcctttcctttcctttcctttcctttcctttcctttc 127

                               
Query: 481 ctttcctttcctttcctttc 500
           ||||||||||||||||||||
Sbjct: 126 ctttcctttcctttcctttc 107


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 97
Number of extensions: 29
Number of successful extensions: 29
Number of sequences better than 10.0: 1
Number of HSP's gapped: 28
Number of HSP's successfully gapped: 1
Length of query: 512
Length of database: 912
Length adjustment: 10
Effective length of query: 502
Effective length of database: 902
Effective search space:   452804
Effective search space used:   452804
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no059_j16.g1 MSMg01no059_j16.g1 CHROMAT_FILE:
MSMg01no059_j16.g1 PHD_FILE: MSMg01no059_j16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:02:09 2005
         (244 letters)



>mm_chr4_106289995_106290638
          Length = 644

 Score =  464 bits (240), Expect = e-135
 Identities = 243/244 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tggtccttctctgctggatggaactctggcgggggaggggagcgatggggagaggggcgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tggtccttctctgctggatggaactctggcgggggaggggagcgatggggagaggggcgt 260

                                                                       
Query: 61  ggcagggcagggtggggcggggaagccaaggaagatggcacgtggaggacaagtagagag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggcagggcagggtggggcggggaagccaaggaagatggcacgtggaggacaagtagagag 320

                                                                       
Query: 121 ataggtgaaggtacttagagacatcagaagggatgcagtggcatcagaacctcagatatc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ataggtgaaggtacttagagacatcagaagggatgcagtggcatcagaacctcagatatc 380

                                                                       
Query: 181 cactctgagcagacactaatggacgactggcccccaaatgtggtccctgtcctctgacaa 240
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cactctgagcagacactaaaggacgactggcccccaaatgtggtccctgtcctctgacaa 440

               
Query: 241 ccac 244
           ||||
Sbjct: 441 ccac 444


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space:   149225
Effective search space used:   149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)