BAC Information

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BAC

Clone NameMSMg01-059J24
Chromosome4 (Build37)
Map Location 67,859,153 - 67,859,391
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039379, Hmgb1-rs18, LOC433715
Downstream geneTcp1-ps1, Dbc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-059J24.T7 (MSMg01no059_j24.b1)MSMg01-059J24.TJ (MSMg01no059_j24.g1)
ACCAG286259AG286260
length695694
length of high quality
(start - end)
239 (379 - 617)607 (74 - 680)
definitionCHROMAT_FILE: MSMg01no059_j24.b1 PHD_FILE: MSMg01no059_j24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:02:10 2005CHROMAT_FILE: MSMg01no059_j24.g1 PHD_FILE: MSMg01no059_j24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:02:10 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NAATCTAAATTTGCGGCGCTAAACGATCACTATATTTCGAGCTCGGCGGA
ATTCACTTTAAAATGTCAGAAAACAATTCTTTCCCCCCAGCTGATCTGCT
GACAATCTCATTCCAAGTAAATTTTCTGGTGTCATACATCTCTGTTTTTC
CATCTCATTTTCTCACACCTATTTTATTTCCATTCCATTAAACACAGCCT
CCTTTTCCTTCCTGACCACTCCATTTTTTTTTTCCTGGGCTCAGGATGCT
TCCCAAGTGTCAGACTTCTCAGACATTCCAGTCTTCTTTTTATATTGGTT
AACTAATTGCTTTCTTTTGATCTANGTGCTTTCTAGGGGCCAGGGCAAGC
TTTTCTCTTGGAACAGAAATCATTTTAGATGATATGAGGGGAATGAGATA
TAAAGAAAAAGGATGAAAAGACAATGTACTCCAAAGACGACAGGAAGAAA
ACAACCAGAAAGTAAAATTAAAGATTTAGCAGCTATTCACAGAAATTAGA
AGGTGAGAAAGAAAATGAGTGATAAATAAATAGAGGAGGAGAGATGAGGA
TTTTAAACAGTGAGAGACAGGAGATGCAAGAAAGCAGACAAACCTGAGCA
AACAGGACATGACCGGGATGAGGGAGAACAGAAATGTAACCAGGACAGGG
ACAATGAAAATGACACAAAGCAATCAGACTGGTTGAAAAAGCAGT
NCCGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCACAG
AAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAAT
CAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCA
AAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAACA
CTCCTCCATTGTTGGTGGGATTTCAGGCTTGTACAACCACTCTGGAAATC
AGTCTGGCAGTTCCTCAGAAAATTGGTCATAGTACTACCGGAGGATCCAG
AAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTGGTAAGAAG
GACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAG
CTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGAATACAGAAAATGT
GGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTT
ATGAAATTCCTAGGCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGA
GGTAACACATTCACAAAGGAACTCACACAATATGTACTCACTGATAAGTG
AATATTAGCCCAAAACCTAGGATACCCAAGATATAAGATACATN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no059_j24.b1 MSMg01no059_j24.b1 CHROMAT_FILE:
MSMg01no059_j24.b1 PHD_FILE: MSMg01no059_j24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:02:10 2005
         (239 letters)



>mm_chr4_67858953_67859591
          Length = 639

 Score =  455 bits (235), Expect = e-132
 Identities = 238/239 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgatatgaggggaatgagatataaagaaaaaggatgaaaagacaatgtactccaaagac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atgatatgaggggaatgagatataaagaaaaaggatgaaaagacaatgtactccaaagac 260

                                                                       
Query: 61  gacaggaagaaaacaaccagaaagtaaaattaaagatttagcagctattcacagaaatta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gacaggaagaaaacaaccagaaagtaaaattaaagatttagcagctattcacagaaatta 320

                                                                       
Query: 121 gaaggtgagaaagaaaatgagtgataaataaatagaggaggagagatgaggattttaaac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaaggtgagaaagaaaatgagtgataaataaatagaggaggagagatgaggattttaaac 380

                                                                      
Query: 181 agtgagagacaggagatgcaagaaagcagacaaacctgagcaaacaggacatgaccggg 239
           ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 381 agtgagagacaggagatgcaagaaagcagacaaacctgagcaaacaggaaatgaccggg 439


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 639
Length adjustment: 9
Effective length of query: 230
Effective length of database: 630
Effective search space:   144900
Effective search space used:   144900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)