Query= MSMg01no059_n22.b1 MSMg01no059_n22.b1 CHROMAT_FILE:
MSMg01no059_n22.b1 PHD_FILE: MSMg01no059_n22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:02:28 2005
(620 letters)
>mm_chr4_93270546_93271564
Length = 1019
Score = 1125 bits (582), Expect = 0.0
Identities = 609/618 (98%), Gaps = 2/618 (0%)
Strand = Plus / Plus
Query: 4 gaattcacctcattattc-caattgatactgtggacagtgaggcaactgggggtagaaaa 62
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 gaattcacctcattattcacaattgatactgtggacagtgaggcaactgggggtagaaaa 262
Query: 63 cttcctcatgctgtccatacccattacatccatattcatgtatgttacctgttttatatg 122
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 cttcctcatgctgtccgtacccattacatccatattcatgtatgttacctgttttatatg 322
Query: 123 ctaaggctttgaaactgtcaaagcggcaagtgtattttcatacaggttcaaaacaacgcg 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 ctaaggctttgaaactgtcaaagcggcaagtgtattttcatacaggttcaaaacaacgcg 382
Query: 183 taaagcaataacgataatctggaaaatagttttctccagctttttaatcaagtagcattt 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 taaagcaataacgataatctggaaaatagttttctccagctttttaatcaagtagcattt 442
Query: 243 ctcaaacttttaatgttataatttggaaggatggcttatgaaataaagcattttcatcac 302
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 443 ctcaaacttttaatgttataatttggaaggatggcttaggaaataaagcattttcatcac 502
Query: 303 aattgacaaaccagagttaattcccgtatggtagcgggagaaaattaactttcaataatt 362
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 aattgacaaaccagagttgattcccgtatggtagcgggagaaaattaactttcaataatt 562
Query: 363 tttctttgacttgcacacatgtacacacacacagatgcacacacacacagacgcatatac 422
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 563 tttctttgacttgcacacatgtacacacacacaaatgcacacacacacagacgcatatac 622
Query: 423 acaaggaggtaggatatacaaaataacaaacataaatgttgatgttctttggggagacag 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 623 acaaggaggtaggatatacaaaataacaaacataaatgttgatgttctttggggagagag 682
Query: 483 tgttgaaagaattaggactactttttctgaaaatgttcatatttcacatattttaatagt 542
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 tgatgaaagaattaggactactttttctgaaaatgttcatatttcacatattttaatagt 742
Query: 543 taagagtttgaaggtcagagtcaccagctccctgagggaaaatgtacacttttttctttt 602
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 743 taagagtttgaaggtcagagtcaccagctccctgagggaaaatgtacacttttt-ctttt 801
Query: 603 agtttcagttttttcagg 620
|||||||||||||||||
Sbjct: 802 tgtttcagttttttcagg 819
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 620
Length of database: 1019
Length adjustment: 10
Effective length of query: 610
Effective length of database: 1009
Effective search space: 615490
Effective search space used: 615490
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no059_n22.g1 MSMg01no059_n22.g1 CHROMAT_FILE:
MSMg01no059_n22.g1 PHD_FILE: MSMg01no059_n22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:02:28 2005
(538 letters)
>mm_chr4_93411637_93412574
Length = 938
Score = 1025 bits (530), Expect = 0.0
Identities = 536/538 (99%)
Strand = Plus / Plus
Query: 1 ttttattgtttattttccgatatctttcttacaaatcatattatgctttgctgtttaagc 60
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 201 ttttattgtttattttccgatatctttcttaaaaatcatattatgctttgctgtttaagc 260
Query: 61 tcaatgtttggaaatttcactttcctgagatccccaagactccatttctcttccttgccc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcaatgtttggaaatttcactttcctgagatccccaagactccatttctcttccttgccc 320
Query: 121 agatcatttaatatggttatttaggttcttataaaatgttttgggaatctgctattgatt 180
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 321 agatcatttaatatggttatttaggttattataaaatgttttgggaatctgctattgatt 380
Query: 181 tcagtgggtttgcttgaaacaaggaaactgacctattaggaaaaacattgagagagatct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcagtgggtttgcttgaaacaaggaaactgacctattaggaaaaacattgagagagatct 440
Query: 241 tattttatgtactaatgttagaatgagttgaagtaacaagtttaaagtgcttccagtttt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tattttatgtactaatgttagaatgagttgaagtaacaagtttaaagtgcttccagtttt 500
Query: 301 tggaccaaaaaagtcaaaatttctatatatggtaatttacaagagacgaaaaacagaaca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tggaccaaaaaagtcaaaatttctatatatggtaatttacaagagacgaaaaacagaaca 560
Query: 361 acattgagtaaagaaatattgacatcaaagcatgccttacagggctacaagaagcaaaat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 acattgagtaaagaaatattgacatcaaagcatgccttacagggctacaagaagcaaaat 620
Query: 421 gaggttatatcaaatgaatatttttatcatttaaactgcattccttgagctatgagttgt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gaggttatatcaaatgaatatttttatcatttaaactgcattccttgagctatgagttgt 680
Query: 481 taatcatatattggatgaaatgaattttcattttatttatgtttcatttattttatgt 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 taatcatatattggatgaaatgaattttcattttatttatgtttcatttattttatgt 738
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 538
Length of database: 938
Length adjustment: 10
Effective length of query: 528
Effective length of database: 928
Effective search space: 489984
Effective search space used: 489984
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
