Query= MSMg01no059_p01.b1 MSMg01no059_p01.b1 CHROMAT_FILE:
MSMg01no059_p01.b1 PHD_FILE: MSMg01no059_p01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:02:33 2005
(652 letters)
>mm_chr4_14070969_14072021
Length = 1053
Score = 1185 bits (613), Expect = 0.0
Identities = 640/649 (98%), Gaps = 3/649 (0%)
Strand = Plus / Minus
Query: 6 gaattctccaattcattcattttgttatttctaaggtgtctgtgctatagctaagataga 65
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 853 gaattctccaattcatttattttgttatttctaaggtgtctgtgctatagctaagataga 794
Query: 66 a-tcaaattttaatgagttcacactctttatttgatcatttatttcagctcgattttcaa 124
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 793 attcaaattttaatgagttcacactctttatttgatcatttatttcagctcgattttcaa 734
Query: 125 aaaatatttcaactgtcaagaagtgtttaggtcctgttcatcattcattccagtacctgc 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 733 aaaatatttcaactgtcaagaagtgtttaggtcctgttcatcattcattccagtacctgc 674
Query: 185 tcattaaaaataattgttcaattaattatcactggctattgcaaaatttgggaagataaa 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 tcattaaaaataattgttcaattaattatcactggctattgcaaaatttgggaagataaa 614
Query: 245 aagagaggtaaagaggaaaataaattcacccataattctgttacccataggcaagaacta 304
|||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||
Sbjct: 613 aagagaggtaaagaggaaaataaattcatccacaattctgttacccataggcaagaacta 554
Query: 305 ccaataagtgacatatttttccatagtgtttgtctacatacttttagaataaattttgag 364
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 ccaataagcgacatatttttccatagtgtttgtctacatacttttagaataaattttgag 494
Query: 365 tagtactgaaaacatcttttaatcttcctattcatatataatttttcattcctttctttc 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 tagtactgaaaacatcttttaatcttcctattcatatataatttttcattcctttctttc 434
Query: 425 attatggttctataatacaccctgtaataattatattgggacttttgtaattgctctaga 484
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 attatggttctagaatacaccctgtaataattatattgggacttttgtaattgctctaga 374
Query: 485 gtaagaaaatactgttgccggagtgtttatgagtatcttcatgaagctctggaacaaatg 544
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 gtaagaaaatactgttgccagagtgtttatgagtatcttcatgaagctctggaacaaatg 314
Query: 545 tgtcaagtgaacattatacagaatgctgataaataaaatatcataaaactaatttcaata 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 tgtcaagtgaacattatacagaatgctgataaataaaatatcataaaactaatttcaata 254
Query: 605 aaatatgcctctatatattttncaa-cagaaagagaatatgaaaataaa 652
||||||||||||||||||||| ||| |||||||||||||||||||||||
Sbjct: 253 aaatatgcctctatatatttt-caaacagaaagagaatatgaaaataaa 206
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 652
Length of database: 1053
Length adjustment: 10
Effective length of query: 642
Effective length of database: 1043
Effective search space: 669606
Effective search space used: 669606
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no059_p01.g1 MSMg01no059_p01.g1 CHROMAT_FILE:
MSMg01no059_p01.g1 PHD_FILE: MSMg01no059_p01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:02:34 2005
(515 letters)
>mm_chr4_13962132_13963046
Length = 915
Score = 903 bits (467), Expect = 0.0
Identities = 503/515 (97%), Gaps = 1/515 (0%)
Strand = Plus / Plus
Query: 1 tatacctaaaattggtgcgaattttatcccttagaacccaatctggtgagctatttaagt 60
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tatacctaaaattggtgtgaattttatcccttagaacccaatctggtgagctatttaagt 260
Query: 61 caaggaactgttgaaagatataatttttctatctgccaaaaataaatagaattgatgtgt 120
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 261 caaggaactgttgaaagatataatctttctatctgccaaaaataaatagaattgatgtgt 320
Query: 121 gctggttcaaatgagaatagcttccataggctcatatatttgaatgtttgatccctagtt 180
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 321 gctggttcaaatgagaatagcttccataggctcatatatttgaatgtttggtccctagtt 380
Query: 181 ggtagaactgtttgagaagggtttggaagtgtgaacttgttaaagaagggtaggctttga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggtagaactgtttgagaagggtttggaagtgtgaacttgttaaagaagggtaggctttga 440
Query: 241 gatttcagaagtccacgccattaccagttttccctctttggttcatgctggtgtatcaag 300
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gatttcagaagtccacaccattaccagttttccctctttggttcatgctggtgtatcaag 500
Query: 301 atgtgggcctcagctactaccccagtgttaaacatacttgcctatttctgtgctccccac 360
||||| ||||||| |||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct: 501 atgtgagcctcagatactaccccagtgttaaacatactcgcctatttctgtgc-ccccac 559
Query: 361 catgatagtcataaactcttaaccctctaaaactgtaagtcccccaatacttgttctttt 420
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 560 catgatagtcataaactcttaaccctctaaaactgtaagtcccccaaaacttgttctttt 619
Query: 421 ataagttctgtttgtcatggtgtcttatcacaacaataggaagaaactaaggcagaattt 480
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 620 ataagttctgtttgtcatggtgtcttatcacaactataggaagaaactaaggcagaattt 679
Query: 481 ggtaccagggagtgggctaattttgtgattggaca 515
| |||||||||||||||||||||| ||||||||||
Sbjct: 680 gataccagggagtgggctaattttatgattggaca 714
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 515
Length of database: 915
Length adjustment: 10
Effective length of query: 505
Effective length of database: 905
Effective search space: 457025
Effective search space used: 457025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
