Query= MSMg01no059_p20.b1 MSMg01no059_p20.b1 CHROMAT_FILE:
MSMg01no059_p20.b1 PHD_FILE: MSMg01no059_p20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:02:37 2005
(610 letters)
>mm_chr4_27147094_27148103
Length = 1010
Score = 1149 bits (594), Expect = 0.0
Identities = 606/610 (99%), Gaps = 1/610 (0%)
Strand = Plus / Plus
Query: 1 gatattcttaaccttcttgtctgtccttccaaagcagagacacctgtcacatgatctata 60
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gatattcttaaccttgttgtctgtccttccaaagcagagacacctgtcacatgatctata 260
Query: 61 aagtcagctacacctcatctaggcaaagatggctgatcttcctcacattcctttacattt 120
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aagtcagccacacctcatctaggcaaagatggctgatcttcctcacattcctttacattt 320
Query: 121 ctcaatgagtctctttaattattatgtcttttgggtatcacatgcagcccagactagctt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctcaatgagtctctttaattattatgtcttttgggtatcacatgcagcccagactagctt 380
Query: 181 tagatgtgatccttctgtctctgcagtgctgggattagaagtgtgagatactagacctaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tagatgtgatccttctgtctctgcagtgctgggattagaagtgtgagatactagacctaa 440
Query: 241 taaattagttcttaggtagggtctctgtgtatagccaggatagcctcaaattccattctc 300
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 taaattagttcttagatagggtctctgtgtatagccaggatagcctcaaattccattctc 500
Query: 301 cagcacgaatctttgtgctgtgagccaccctgcccagttgtagttaaacttcagagggca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cagcacgaatctttgtgctgtgagccaccctgcccagttgtagttaaacttcagagggca 560
Query: 361 gaaacagcaaaaatgataatgcagttttcattttaataaaagaagcccttctaatttata 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gaaacagcaaaaatgataatgcagttttcattttaataaaagaagcccttctaatttata 620
Query: 421 taatgtgctaatgaagaaacaaaaacaaaatctgtgtttctttctatcctcaaaacataa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 taatgtgctaatgaagaaacaaaaacaaaatctgtgtttctttctatcctcaaaacataa 680
Query: 481 acaccacacacaaacaaacaaacaaacaaaaaaaggagtctagaatttcttatctagttt 540
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 681 acaccacacacaaacaaacaaacaaacaaaaaa-ggagtctagaatttcttatctagttt 739
Query: 541 tgtttttgagacacagtctctgtagcccaggttggcctctcactacaactctcttgcctc 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 tgtttttgagacacagtctctgtagcccaggttggcctctcactacaactctcttgcctc 799
Query: 601 tactaggatt 610
||||||||||
Sbjct: 800 tactaggatt 809
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 610
Length of database: 1010
Length adjustment: 10
Effective length of query: 600
Effective length of database: 1000
Effective search space: 600000
Effective search space used: 600000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no059_p20.g1 MSMg01no059_p20.g1 CHROMAT_FILE:
MSMg01no059_p20.g1 PHD_FILE: MSMg01no059_p20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:02:37 2005
(600 letters)
>mm_chr4_27269338_27270343
Length = 1006
Score = 588 bits (304), Expect = e-172
Identities = 360/384 (93%), Gaps = 12/384 (3%)
Strand = Plus / Minus
Query: 224 ttgtgtctctgaactgaaattttcaggtaatttttgcattttaaggtagcgaccctttca 283
|||| |||||||||||||||||||||||||||| ||||||||||||||| ||||||||||
Sbjct: 695 ttgtatctctgaactgaaattttcaggtaatttgtgcattttaaggtagtgaccctttca 636
Query: 284 tttattatcagtctttcccttctaatatc------tacctgaattcatgtgtagaattat 337
|||||||||| |||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 635 tttattatcattctttcccttctaatatctacatgtacctgaattcatgtgtagaattat 576
Query: 338 ttatatgtgagaaatgtttatcaaaggtactgaagagaagacacatttcataaagaaaca 397
||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 575 ttatacatgagaaatgtttatcaaaggtactgaagagaaggcacatttcataaagaaaca 516
Query: 398 gaaaggaatttactctgtgctgtggaagccaaaggtcatattgcaaaattaaggtacaca 457
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 515 gaaaggaatttactctgtgctgtggaagccaaagggcatattgcaaaattaaggtacaca 456
Query: 458 gggtcattatgaaatgaatagaatgaagagtgtaatattaatattatttaacatttatca 517
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 gggtcattatgaaatgaacagaatgaagagtgtaatattaatattatttaacatttatca 396
Query: 518 attataaatcata-tcctgcaatatttttgttagattaatctatacagagtgacgtagtt 576
||||||||||||| || ||||||||||| ||||||||||||||||||||||| | ||
Sbjct: 395 attataaatcatactc-tgcaatatttt----agattaatctatacagagtgacgaaatt 341
Query: 577 tatttctatgcatatacatagagc 600
||||||||||| ||||||||||||
Sbjct: 340 tatttctatgcgtatacatagagc 317
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 600
Length of database: 1006
Length adjustment: 10
Effective length of query: 590
Effective length of database: 996
Effective search space: 587640
Effective search space used: 587640
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
