BAC Information

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BAC

Clone NameMSMg01-060B05
Chromosome4 (Build37)
Map Location 66,999,445 - 67,000,000
singlet/doubletsinglet
Overlap genenone
Upstream geneAstn2, LOC667499, Tlr4
Downstream geneLOC100039379, Hmgb1-rs18, LOC433715, Tcp1-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-060B05.T7 (MSMg01no060_b05.b1)MSMg01-060B05.TJ (MSMg01no060_b05.g1)
ACCAG286605AG286606
length709720
length of high quality
(start - end)
567 (40 - 606)556 (82 - 637)
definitionCHROMAT_FILE: MSMg01no060_b05.b1 PHD_FILE: MSMg01no060_b05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:02:43 2005CHROMAT_FILE: MSMg01no060_b05.g1 PHD_FILE: MSMg01no060_b05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:02:44 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCT
CAACAGATACATCTCTAATAACTGGGAATAACTTAAAGAAATGCTTACAA
TCCTTAGGCCTCAGGGAAATGAAAGTCAAAACGACTTTGGATTCTATCTT
ACATTTTACAAGATGGCTAAGATAAAAAAAAACCCTCAAGGGACATCTCA
TGCTGGTGAGGATGTAGAGCAAGAAAAACACCTCTCCATGCTGATGTGAG
TGTGAAGTTGTACAACCACTTCAGAAGTCAATTTGGTGATTTCTCAGAAA
ATTGGAAATAGTTTTATTTCAAGACTCAGCTGTACCACCCCTGGATATAT
AGCCAAAAGATGTTCCACCATAAAACAAGGACACTTGCTCAACTATACTA
ATAGCAGCTTTATTCTGAATAGCCAAATCTGGAAGCAACCTAGTTGTCTG
AAGAATGGATGAAGAATGGAATAATACTCAACTATTACAATGGAATATTA
CTCAGCTATTANAAATAATGACATCATAAACTTTGCAGCAAATGGTTGGA
ACTATAAAATACTATCCCGAGTGAGGTAATACAGACTCAGAAAGAGAACC
ATTGTATGTACTTTTAAGTGAATGTTAGCCCTAAAGTATAGGATATGCAT
GCTGCAAAACACAGGACCCGAAGAAGTTATATAACCAAGAGCACTTAACG
GATGATGAT
AAAATCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAGTGATTTCAACAAGTTC
AAGTCTATCATCAGAGATTCATCAGAGATTTCTGGCATGAGGAAGGATTT
AAGTAGAAATCAAGAGTGATATACAGCTAAACAGACCATGAAATTTCAAT
GTCCTCCCTACCACTGTTGCACACCCAATTCCCCCTGCAAAGTCATCAGG
AAAGTTGTAGTGTTTTCTCCAGGAGAAGACTTTCCACTTCAGATTCAAGG
AAGACTTCTCTCTCCTGGCAGGATACTCTTGGGAGAAAATATTTTGAAGA
ATATTTTGTGTGAATGGTGTAATAGCAAAGGAGAGGGCAGTCATGCCATT
TTAGAATATCCTCATTCCTAATGCACAGGCTGATTATATTCCTTAGTCTT
TGTTTTACTCCATAATCTTGAGATGGAATATTCCTCTTTCTGAAACAATA
CCACAAACAGAATATAACCAGCAATCAAGATTAGAACACATTCAGATAGT
GTCAGATTTGGATGATAAGAGCCATTTCTCTATTATTTCTTGGCTTTTGG
AAGAACTTTCAAAAGTAACTCCTCCTTGTTGGTTTGTGATAGAGCCACTA
TAAATTTCAAGGCTGAAATCCAACATATAATAATTTTTACTTTACCCTCT
CACAACTCTGGAATTACAGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no060_b05.g1 MSMg01no060_b05.g1 CHROMAT_FILE:
MSMg01no060_b05.g1 PHD_FILE: MSMg01no060_b05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:02:44 2005
         (556 letters)



>mm_chr4_66999245_67000200
          Length = 956

 Score = 1060 bits (548), Expect = 0.0
 Identities = 554/556 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cagtgatttcaacaagttcaagtctatcatcagagattcatcagagatttctggcatgag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 756 cagtgatttcaacaagttcaagtctatcatcagagattcatcagagatttctggcatgag 697

                                                                       
Query: 61  gaaggatttaagtagaaatcaagagtgatatacagctaaacagaccatgaaatttcaatg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 696 gaaggatttaagtagaaatcaagagtgatatacagctaaacagaccatgaaatttcaatg 637

                                                                       
Query: 121 tcctccctaccactgttgcacacccaattccccctgcaaagtcatcaggaaagttgtagt 180
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 636 ccctccctaccactgttgcacacccaattccccctgcaaagtcatcaggaaagttgtagt 577

                                                                       
Query: 181 gttttctccaggagaagactttccacttcagattcaaggaagacttctctctcctggcag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 576 gttttctccaggagaagactttccacttcagattcaaggaagacttctctctcctggcag 517

                                                                       
Query: 241 gatactcttgggagaaaatattttgaagaatattttgtgtgaatggtgtaatagcaaagg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 gatactcttgggagaaaatattttgaagaatattttgtgtgaatggtgtaatagcaaagg 457

                                                                       
Query: 301 agagggcagtcatgccattttagaatatcctcattcctaatgcacaggctgattatattc 360
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 456 agagggcagtcatgccattttagaatatcctcattcctaatggacaggctgattatattc 397

                                                                       
Query: 361 cttagtctttgttttactccataatcttgagatggaatattcctctttctgaaacaatac 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 cttagtctttgttttactccataatcttgagatggaatattcctctttctgaaacaatac 337

                                                                       
Query: 421 cacaaacagaatataaccagcaatcaagattagaacacattcagatagtgtcagatttgg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 cacaaacagaatataaccagcaatcaagattagaacacattcagatagtgtcagatttgg 277

                                                                       
Query: 481 atgataagagccatttctctattatttcttggcttttggaagaactttcaaaagtaactc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 atgataagagccatttctctattatttcttggcttttggaagaactttcaaaagtaactc 217

                           
Query: 541 ctccttgttggtttgt 556
           ||||||||||||||||
Sbjct: 216 ctccttgttggtttgt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 556
Length of database: 956
Length adjustment: 10
Effective length of query: 546
Effective length of database: 946
Effective search space:   516516
Effective search space used:   516516
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)