Query= MSMg01no060_i20.b1 MSMg01no060_i20.b1 CHROMAT_FILE:
MSMg01no060_i20.b1 PHD_FILE: MSMg01no060_i20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:03:18 2005
(528 letters)
>mm_chr4_22306237_22307164
Length = 928
Score = 965 bits (499), Expect = 0.0
Identities = 517/523 (98%), Gaps = 2/523 (0%)
Strand = Plus / Minus
Query: 7 gaattcactt-cttcgaggaaaccactctattgaccttccgagagccacaggcacattgg 65
|||||||||| ||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 534 gaattcacttcctt-gaggaaaccactctattgacgttccgagagccacaggcacattgg 476
Query: 66 cttcccctagccaggacatgtcccttaaatgtcacagtccacttccagggtggtttgtag 125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 cttcccctagccaggacatgtcccttaaatgtcacagtccacttccagggtggtttgtag 416
Query: 126 ctcagaacaaaagccatctttgtgtggttctttgttttgttcccagcagagaaaggatgc 185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 ctcagaacaaaagccatctttgtgtggttctttgttttgttcccagcagagaaaggatgc 356
Query: 186 ccaatgaatgtttcccactgtctaaagaaactcaccaaaacattaacagttactgaatct 245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 ccaatgaatgtttcccactgtctaaagaaactcaccaaaacattaacagttactgaatct 296
Query: 246 gtaagaaccttttaatcttccttttagatgatgaagcatctcttaagctcacaatcagta 305
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 295 gtaagaaccttttaatcttccttttagatgatgaagcatctcttaagctcacaatcagta 236
Query: 306 acacttaaaaatgccttcttggagctaagtaatcccagcactgagaggaaggaggagggg 365
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 235 acacttaaaaatgccttcttggagctaagtaatcccagcactgagaggaaggaggagggg 176
Query: 366 gactgctgtgagttccaggacagcgtggggctgaaactgtctccaaaaaccaaaataaaa 425
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 175 gactgctgtgagttccaggacagcgtggggctgaaactgtctccaaaaaccaaaacaaaa 116
Query: 426 cagaggttttgttttgcaggaacacacactcatctgacgccttttctcctaaactttaat 485
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 115 cagaggttttgttttgcaggaacacacactcatctgatgccttttctcctaaactttaat 56
Query: 486 ggcgttttctgagaaataaagctaaaatcaataaagcaaatca 528
|| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 55 ggtgttttctgagaaataaagctaaaatcaataaagcaaatca 13
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 528
Length of database: 928
Length adjustment: 10
Effective length of query: 518
Effective length of database: 918
Effective search space: 475524
Effective search space used: 475524
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no060_i20.g1 MSMg01no060_i20.g1 CHROMAT_FILE:
MSMg01no060_i20.g1 PHD_FILE: MSMg01no060_i20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:03:18 2005
(440 letters)
>mm_chr4_22198706_22199545
Length = 840
Score = 816 bits (422), Expect = 0.0
Identities = 434/438 (99%)
Strand = Plus / Plus
Query: 1 acccagggcgtggtgcacagtgacgaaaggttcagctgctatgcttggacaattctaatg 60
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 201 acccagggcgtggtgcacagtgacgaaaggttcagctgctatgcttggagaattctaatg 260
Query: 61 aagaaacaaggtgattttttaagggtgacagttaatgtatcagtgacatatgttagtgga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aagaaacaaggtgattttttaagggtgacagttaatgtatcagtgacatatgttagtgga 320
Query: 121 tatttttattctgtccttcaacttcttgaaactgtgtgtttttgaggtataactttctga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tatttttattctgtccttcaacttcttgaaactgtgtgtttttgaggtataactttctga 380
Query: 181 tttaatgttaaatacttttttgagacgtttatatcaattaaatcttaccagccaacttca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tttaatgttaaatacttttttgagacgtttatatcaattaaatcttaccagccaacttca 440
Query: 241 tatgctgcaaataaactatcataaattgataacagatatttcatgagtttatagtctgca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tatgctgcaaataaactatcataaattgataacagatatttcatgagtttatagtctgca 500
Query: 301 tagaataatatgcgccagtatttgtcatatattacatgtcctgacgcggttcaaaagaat 360
|||||||||||||||||||||||||||||||||||||| ||||| | |||||||||||||
Sbjct: 501 tagaataatatgcgccagtatttgtcatatattacatgccctgatggggttcaaaagaat 560
Query: 361 tattggtcataagttttcccagtgaaggaactgagaatgtaaacaattaagtaaaattat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tattggtcataagttttcccagtgaaggaactgagaatgtaaacaattaagtaaaattat 620
Query: 421 tttttcatgaaagtaatg 438
||||||||||||||||||
Sbjct: 621 tttttcatgaaagtaatg 638
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 440
Length of database: 840
Length adjustment: 9
Effective length of query: 431
Effective length of database: 831
Effective search space: 358161
Effective search space used: 358161
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
