Query= MSMg01no060_i21.b1 MSMg01no060_i21.b1 CHROMAT_FILE:
MSMg01no060_i21.b1 PHD_FILE: MSMg01no060_i21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:03:18 2005
(374 letters)
>mm_chr4_143499115_143499888
Length = 774
Score = 654 bits (338), Expect = 0.0
Identities = 359/366 (98%)
Strand = Plus / Plus
Query: 9 gaattcatgaaattcctaggccaatgaatggatcaggaggatatcatcctaagtgaggaa 68
|||||||||| |||| |||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 209 gaattcatgatattcttaggccaatgaatggatcgggaggatatcatcctaagtgaggaa 268
Query: 69 acccaattgcaaaagaacacacatgatatgcactcacagataagtggatgcacatccaga 128
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 269 acccaattgcaaaagaacacacatgatatgcactcacagataagtggatgcacatccaaa 328
Query: 129 ctgtgtctgaaatttaaaagtgatccaagacatttaaatttccccaagcagctctagagc 188
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 ctgtgtctgaaatttaaaagtgatccaagacatttaaatttccccaagcagctctagagc 388
Query: 189 catgtggctacataagagtaccctgaaagattgaatgtgagagagacatgccactgaatg 248
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 catgtggctacctaagagtaccctgaaagattgaatgtgagagagacatgccactgaatg 448
Query: 249 gttcagcttgcattgctttccctcctcccactttctcatttatctttctttctgtggtag 308
||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||
Sbjct: 449 gttcagcttgcattgctttccctcctccccctttctcctttatctttctttctgtggtag 508
Query: 309 ctctggactttgcacacaaagacagaatgctctagattttcagaccagttggggctgtgt 368
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 ctctggactttgcacacaaagacagaatgctctagattttcagaccagttggggctgtgt 568
Query: 369 ggtgaa 374
||||||
Sbjct: 569 ggtgaa 574
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 374
Length of database: 774
Length adjustment: 9
Effective length of query: 365
Effective length of database: 765
Effective search space: 279225
Effective search space used: 279225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no060_i21.g1 MSMg01no060_i21.g1 CHROMAT_FILE:
MSMg01no060_i21.g1 PHD_FILE: MSMg01no060_i21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:03:18 2005
(591 letters)
>mm_chr4_142991582_142992573
Length = 992
Score = 1067 bits (552), Expect = 0.0
Identities = 584/602 (97%), Gaps = 15/602 (2%)
Strand = Plus / Plus
Query: 1 aaaaagtgagccaggcgtggtggcgcacgcctttaatcccagcacttgggaggcagaggc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 195 aaaaagtgagccaggcgtggtggcgcacgcctttaatcccagcacttgggaggcagaggc 254
Query: 61 aggcggatttctgagttcgaggccagcctggtctacaaagtgagctccaggacagccaga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 aggcggatttctgagttcgaggccagcctggtctacaaagtgagctccaggacagccaga 314
Query: 121 gctatacagagagagagagaga---aaaaaa----ttaaaaaagtgctcaagagtactca 173
|||||| ||||||||||||||| |||||| |||||||||||||||||||||||||
Sbjct: 315 gctataaagagagagagagagagagaaaaaaagaattaaaaaagtgctcaagagtactca 374
Query: 174 ccatagtctatttaccagcaaaggatgggcttcagccttcagttcccaagcaacccctcc 233
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 ccatagtctatttaccagcaaaggatgggcttcagccttcagttcccaagcaacccctcc 434
Query: 234 ccagtgaggatagattcagaggaacggtggttggaattggacacaatagtgaggaatgtg 293
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 ccagtgaggatagattcagaggaacggtggttggaattggacacaatagtgaggaatgtg 494
Query: 294 ggtacttgtgagaggatcctcaagctatcattaagaagaccccgc----ccttgagacca 349
||||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct: 495 ggtacttgtgagaggatcctcaagctatcattaagaaga----gtttggccttgagacca 550
Query: 350 agagatgctgagtggaatggggtaaactgaggtctccttcattattctgagttggttgct 409
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 agagatgctgagtggaatggggtaaactgaggtctccttcattattctgagttggttgct 610
Query: 410 atgataaattagaaatttttttttcccccaagaaaaattttcaggatccatcaggatgaa 469
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 atgataaattagaaatttttttttcccccaagaaaaattttcaggatccatcaggatgaa 670
Query: 470 ttcccaagccacacccatactccttgtccctggcagtgcagagagagcctgatgatggat 529
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 671 ttcccaagccacacccatactccttgtccctggcagtgcagagagagcctgatgatggat 730
Query: 530 gaggccctggtcatctctgctctgcaggagctgcccatggagctctttccactactgttc 589
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 731 gaggccctggccatctctgctctgcaggagctgcccatggagctctttccactactgttc 790
Query: 590 aa 591
||
Sbjct: 791 aa 792
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 591
Length of database: 992
Length adjustment: 10
Effective length of query: 581
Effective length of database: 982
Effective search space: 570542
Effective search space used: 570542
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
