Query= MSMg01no061_g10.b1 MSMg01no061_g10.b1 CHROMAT_FILE:
MSMg01no061_g10.b1 PHD_FILE: MSMg01no061_g10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:04:21 2005
(618 letters)
>mm_chr4_28274991_28276007
Length = 1017
Score = 1133 bits (586), Expect = 0.0
Identities = 608/616 (98%), Gaps = 3/616 (0%)
Strand = Plus / Plus
Query: 5 gaattcactcacaaccgcttcctagagtctcaagagtacaaatgtaataaaagaccataa 64
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcactcacaactgcttcctagagtctcaagagtacaaatgtaataaaagaccataa 264
Query: 65 gtagtgacattctgctgagtggattgatgctggactgagcaagattggagtagaatcatg 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gtagtgacattctgctgagtggattgatgctggactgagcaagattggagtagaatcatg 324
Query: 125 gcaggcatgcatggaaaaagtcatgtgttttcaaacatcccattagcacataaagctaat 184
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 325 gcaggcatgcatggaaaaagtcatgtgtttt-aaacatcccattagcacataaagctaat 383
Query: 185 gtctttgatataaatatttccagtgctaaaaattcttggtataaatctccccactctaag 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gtctttgatataaatatttccagtgctaaaaattcttggtataaatctccccactctaag 443
Query: 245 catgtagcagggcataagcaaagagatgctttctggtgactacattttctattttggggt 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 catgtagcagggcataagcaaagagatgctttctggtgactacattttctattttggggt 503
Query: 305 atcatattgccgtgacttttgttaattgtgttttttcgagggtcttaagccagttgaatg 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 atcatattgccgtgacttttgttaattgtgttttttcgagggtcttaagccagttgaatg 563
Query: 365 gtttggccccttgtatgttcttgttgtagtaggtattgggatcgtggtaaacttagatgg 424
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 gtttgggtccttgtatgttcttgttgtagtaggtattgggatcgtggtaaacttagatgg 623
Query: 425 tcctcctgttgcagttctctgatgggtatccttgctctgtattgttctggacgagtgcag 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 tcctcctgttgcagttctctgatgggtatccttgctctgtattgttctggacgagtgcag 683
Query: 485 ttctgtatggttcatgagcctcaggtcccatgaaggtgaatagagagagag--gttgcag 542
||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 684 ttctgtatgtttcatgagcctcaggtcccatgaaggtgaatagagagagagaggttgcag 743
Query: 543 gagaatggagattctcctgggctagcaggatgctatgggcagcttgtcttgactcatagg 602
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 744 gagaatggagattctcctgggctagcaggatgctatgggcagcttgtcttgactcagagg 803
Query: 603 gctcagactgcaggga 618
||||||||||||||||
Sbjct: 804 gctcagactgcaggga 819
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 618
Length of database: 1017
Length adjustment: 10
Effective length of query: 608
Effective length of database: 1007
Effective search space: 612256
Effective search space used: 612256
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no061_g10.g1 MSMg01no061_g10.g1 CHROMAT_FILE:
MSMg01no061_g10.g1 PHD_FILE: MSMg01no061_g10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:04:22 2005
(208 letters)
>mm_chr4_28423434_28424041
Length = 608
Score = 310 bits (160), Expect = 6e-89
Identities = 199/214 (92%), Gaps = 6/214 (2%)
Strand = Plus / Minus
Query: 1 atagagctctaagtgtctcaatatcctgagtgttgggtttaatgtcaggtatcaccatgc 60
|||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct: 362 atagagctctaagtgtctcaatatcctgagtgttgggtttaatgtcaggtataactatgc 303
Query: 61 tcagcttgataaggtttggactttcagagagaaaaggaaatgtaaaaaagtcatctctat 120
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 tcagcttgataaggtttgaactttcagagagaaaaggaaatgtaaaaaagtcatctctat 243
Query: 121 ataagcctaccccccaaaatactttgaaaacattaaaaattttgtgtgtgtgtgtgtgtg 180
|| ||||||||||||||||||||||||||||||||||||||| ||||| ||| ||| |||
Sbjct: 242 atgagcctaccccccaaaatactttgaaaacattaaaaatttagtgtgcgtgcgtgcgtg 183
Query: 181 tgtg--tg--tg--tgtgtgtgtgtgtgtgtgtg 208
||| || || ||||||||||||||||||||
Sbjct: 182 cgtgcatgcatgcctgtgtgtgtgtgtgtgtgtg 149
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 46
Number of extensions: 23
Number of successful extensions: 23
Number of sequences better than 10.0: 1
Number of HSP's gapped: 23
Number of HSP's successfully gapped: 1
Length of query: 208
Length of database: 608
Length adjustment: 9
Effective length of query: 199
Effective length of database: 599
Effective search space: 119201
Effective search space used: 119201
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
