XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
TTTGTTCACTTCTGAGCCCCATTTTTTAATGGGGTTATTTGATTTTCTGA
AGTCCACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTCCCCTATCT
GATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTTTTTGT
CTTATTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTCATTAGGT
CCCATTTGTCAATTCTCGATCTTACAGCACAAGCCATTGCTGTTCTGTTC
AGGAATTTTTCCCCTGTGACCATATCTTCAAGGCTTTTCCCCACTTTCTC
CTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGAAGTTCCTTGATCCACT
TAGATTTGACCTTAGTACAAGGAGATAAGTATGGATCGATTCGCATTCTT
CTACACGATAACAACCAGTTGTGCCAGCACCAATTGTTGAAAATGCTGTC
TTTCTTCCACTGGATGGTTTTAGCTCCCTTGTCGAAGATCAAGTGACCAT
AGGTGTGTGGGTTCATTTCTGGGTCTTCAATTCTATTCCATTGGTCTACT
TGTCTGTCTCTATACCAGTACCATGCAGTTTTTATCACAATTGCTCTGTA
GTAAAGCTTTAGGTCCGGCATGGTGATTCCGCCAGAAGTTCTTTTTCCTT
GATAAGACTT

ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTCATCTTTTAAAATTTGGGGATGTAGGATC
GGATCACACATTGAATGTGCAGAATATGTACTTAAAGCAAATGTTGAACA
CTGTGGCCACTGTCAGGGACATTCATCTGCATCTCAAGAGACCTGCTGGT
GTCAGTGACAAACAAGTAACCCTGTTCCCCAAGACATCAAAGTCAGAATC
TCAGGCATACTAGACCTGATTGAAGGAGTCAGTACACACGTCAAGAGCAC
CTTAAACTCCAAACGTTCCTGTTGTAAAAATCCAAGAAATGTGAGATACT
ATAAAGAGATCACATCAAAGAATAATAGGATTAAAAGAAGACAATTCCCA
TCTCAAAAGCCCAGAAATTATTTTTCTTTAAATCATAAAAACAAATTTCC
CCAACCTAAAGACAGGTATGCCTATAAACATAAAAGAAACAAACAGAACA
CCAAATGGATTGGAGCAGAAAAAAATTCCCACTGCCACATAAAAACCAAA
CACTACATACATAGAACAAAAATAAAATTATATTAAAATTTTCAAGGGAA
AAGACTAAGTAACATACAATGGCAGACCTATTAGGGTCATATATATCTTC
TCAACAGAGATTCTAAAAGCCAGGAAAGCCTGGGCAGATGTCTTGCAGTC
TCTCCGGGATGC

Query= MSMg01no061_i12.g1 MSMg01no061_i12.g1 CHROMAT_FILE:
MSMg01no061_i12.g1 PHD_FILE: MSMg01no061_i12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:04:32 2005
         (585 letters)



>mm_chr4_66891369_66892354
          Length = 986

 Score = 1065 bits (551), Expect = 0.0
 Identities = 578/587 (98%), Gaps = 2/587 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcatctttta-aaatttggggatgtaggatcggatcacacattgaatgtgcagaatatgt 59
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcatcttttacaaatttggggatgtaggatcggatcacacattgaatgtgcagaatatgt 260

                                                                       
Query: 60  acttaaagcaaatgttgaacactgtggccactgtcagggacattcatctgcatctcaaga 119
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 261 acttaaagcaaatgttgaacactgtggccactgtcagggacatccatctgcatctcaaga 320

                                                                       
Query: 120 gacctgctggtgtcagtgacaaacaagtaaccctgttccccaagacatcaaagtcagaat 179
           | ||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 321 ggcctgctggtgtcagttacaaacaagtaaccctgttcctcaagacatcaaagtcagaat 380

                                                                       
Query: 180 ctcaggcatactagacctgattgaaggagtcagtacacacgtc-aagagcaccttaaact 238
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 381 ctcaggcatactagacctgattgaaggagtcagtacacacgtccaagagcaccttaaact 440

                                                                       
Query: 239 ccaaacgttcctgttgtaaaaatccaagaaatgtgagatactataaagagatcacatcaa 298
           |||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct: 441 ccaaacgttcctgttgtaaaaatccaagaaatatgagatactataaagaggtcacatcaa 500

                                                                       
Query: 299 agaataataggattaaaagaagacaattcccatctcaaaagcccagaaattatttttctt 358
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agaataataggattaaaagaagacaattcccatctcaaaagcccagaaattatttttctt 560

                                                                       
Query: 359 taaatcataaaaacaaatttccccaacctaaagacaggtatgcctataaacataaaagaa 418
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 taaatcataaaaacaaatttccccaacctaaagacaggtatgcctataaacataaaagaa 620

                                                                       
Query: 419 acaaacagaacaccaaatggattggagcagaaaaaaattcccactgccacataaaaacca 478
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 acaaacagaacaccaaatggattggagcagaaaaaaattcccactgccacataaaaacca 680

                                                                       
Query: 479 aacactacatacatagaacaaaaataaaattatattaaaattttcaagggaaaagactaa 538
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aacactacatacatagaacaaaaataaaattatattaaaattttcaagggaaaagactaa 740

                                                          
Query: 539 gtaacatacaatggcagacctattagggtcatatatatcttctcaac 585
           |||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gtaatatacaatggcagacctattagggtcatatatatcttctcaac 787


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 585
Length of database: 986
Length adjustment: 10
Effective length of query: 575
Effective length of database: 976
Effective search space:   561200
Effective search space used:   561200
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)