BAC Information

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BAC

Clone NameMSMg01-061L10
Chromosome4 (Build37)
Map Location 41,277,097 - 41,376,802
singlet/doubletdoublet
Overlap geneUbap1, Kif24
Upstream geneA930001M12Rik, Aptx, LOC665630, LOC622208, Dnaja1, Smu1, LOC100042305, B4galt1, LOC100039668, Spink4, Bag1, Chmp5, Nfx1, Aqp7, Aqp3, Nol6, Ube2r2, Ubap2, Wdr40a
Downstream geneNudt2, AI464131, 1110017D15Rik, 1700066J24Rik, 2310028H24Rik, Dnaic1, 2310040A07Rik, LOC100042420, Cntfr, 2810432D09Rik, Dctn3, OTTMUSG00000006683, Oprs1, Galt, Il11ra1, Ccl27, LOC100039789, LOC623085, LOC100042466, LOC100042472, LOC100042493, Ccl19-ps1, LOC621580, LOC545611, LOC100042524, LOC100042519, LOC100039817, LOC100042536, LOC100039824, LOC100042539, LOC100042544, LOC100039848, LOC100039863, LOC100042555, 1700045I11Rik, LOC100039894, LOC100039909, EG545605, LOC674214, LOC100038965, LOC100039053, LOC100039193, LOC100039374, LOC100039930, LOC100038993, LOC100039939, Ccl19-ps3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-061L10.T7 (MSMg01no061_l10.b1)MSMg01-061L10.TJ (MSMg01no061_l10.g1)
ACCAG287859AG287860
length798726
length of high quality
(start - end)		203 (71 - 273)359 (72 - 430)
definitionCHROMAT_FILE: MSMg01no061_l10.b1 PHD_FILE: MSMg01no061_l10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:04:46 2005CHROMAT_FILE: MSMg01no061_l10.g1 PHD_FILE: MSMg01no061_l10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:04:46 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(41,277,097 - 41,277,299)(41,376,462 - 41,376,802)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGCGCGACTACGCGGAATTC
ACTCTGTTTTACCGAAAGAACTTGAACTCAAAATATTGGCCTGCTTCTGC
TTCCCAGGTGCTGGGATTAAATGTGTGAGCCACCATTGCCCATCATTCTA
CTACTCTTAACTAACTTGATCGAATCATAATCCAACAGTAATCATATCTC
GGGTTTCTAAGTCAAGTCTTATTGCTATTGGGTATGTTGTCTAATAGTTT
TCCAATTTTTGAACTTACTATGTGTAGTGTCTATTCCTGGTTGTCAACTT
GACTATATTTGGAATGTTTTTTTATCCATAACTGGAAGGCTCACCAGTGA
CCCTTATCTGGAGGCTTGCAGCACCTTATCTGAAACTTGAATTGAAAATA
ATGAGCCATAATGCCTATGTTTTTCATAAAATTGTTTCTCCGAGTTTAAT
TAATTTACCTTTAATCTGTATTAAATCTTTAAGTTGTTTCTAATTAATAC
ATCTATGTATATATATCACCTTTATTTCCTCTGTTTCTGCCCTCTTCTTC
TAGTTTTCTTTATATTATAGATGTATTTATTGGTGATATTCCATTGTACT
TTCTTTCTCTTCAAACTTTTGATTGATTACATTATTATTTTTAATTATAA
TTCCTCCTCTTGTCCTTACCCAATCTTTTTTCTTTCTTTTCATCTATTTT
TTAAAAATTCTATTATTATTCCACACCATTATTTATTTTCTCAATCTTTC
TAACCCTCTCCACCTAATCTCTTTTATTAATACCACTATATCTTTAAA

TGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTGACTGTAATAGACAAAGATTTTGTATTA
ATTACCTCATCACCCGTTAGTGTTTAATTAAATTCCTAGTGTTTTAATGA
AAGTCGTTCAAATTTGCATGTGTAGTATTAATTTTCTAGGGAAATTATTT
GATTGATATTTTGTTCAGGTAGATATCTGTGACCACCTTTTAGAATTATC
TAAAATACTGAATGAGTTGATTCTGAATTGGTTGTTTTTACTTCTGTCTT
ACTTACCAGTACACAGCAGATTAAAAAGGCATTTTTCTCTGAACTGTGTT
CCTTTATAATCTTTGAGGTTGCTATTTTATTCTGCTGTCTGTTCTGAAAG
ACTTCTTAGCCTCTCCCCCATTAATCTTATTAAGCAGGTGTGCAACATGC
CTTGCCCTTAAGTGGAACATCTAAAATTACCCCTGCTACAATCAGTGGCT
GGGAACAAAGCTTCAGCAGCGCCTTGCATGCGCTAACCAGATACTGCTAA
GTTATAATAAACTGCCCAGCATTATTCACGTGTTCTATGTTATGTCCGTG
CGTCCCCATATCTACTTAAACCTATTTTTATGAAACCTTTTTTATCAATC
CCACGATTGAATCCCAACTTGTTATCTCATATGCTCTGTCACTTTATCTT
CTTTCGCTTTAATTTGCGCTGTCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no061_l10.b1 MSMg01no061_l10.b1 CHROMAT_FILE:
MSMg01no061_l10.b1 PHD_FILE: MSMg01no061_l10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:04:46 2005
         (203 letters)



>mm_chr4_41276897_41277499
          Length = 603

 Score =  385 bits (199), Expect = e-111
 Identities = 202/203 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cttgaactcaaaatattggcctgcttctgcttcccaggtgctgggattaaatgtgtgagc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cttgaactcaaaatattggcctgcttctgcttcccaggtgctgggattaaatgtgtgagc 260

                                                                       
Query: 61  caccattgcccatcattctactactcttaactaacttgatcgaatcataatccaacagta 120
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 261 caccattgcccatcattctactactcttaactaacttgatcgaatcaaaatccaacagta 320

                                                                       
Query: 121 atcatatctcgggtttctaagtcaagtcttattgctattgggtatgttgtctaatagttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atcatatctcgggtttctaagtcaagtcttattgctattgggtatgttgtctaatagttt 380

                                  
Query: 181 tccaatttttgaacttactatgt 203
           |||||||||||||||||||||||
Sbjct: 381 tccaatttttgaacttactatgt 403


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 203
Length of database: 603
Length adjustment: 8
Effective length of query: 195
Effective length of database: 595
Effective search space:   116025
Effective search space used:   116025
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no061_l10.g1 MSMg01no061_l10.g1 CHROMAT_FILE:
MSMg01no061_l10.g1 PHD_FILE: MSMg01no061_l10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:04:46 2005
         (359 letters)



>mm_chr4_41376262_41377020
          Length = 759

 Score =  636 bits (329), Expect = 0.0
 Identities = 338/341 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgactgtaatagacaaagattttgtattaattacctcatcacccgttagtgtttaattaa 60
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 541 tgactgtaatagacaaagattttgtattaattacctcatcatccgttagtgtttaattaa 482

                                                                       
Query: 61  attcctagtgttttaatgaaagtcgttcaaatttgcatgtgtagtattaattttctaggg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 attcctagtgttttaatgaaagtcgttcaaatttgcatgtgtagtattaattttctaggg 422

                                                                       
Query: 121 aaattatttgattgatattttgttcaggtagatatctgtgaccaccttttagaattatct 180
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 421 aaattatttgattgatattttgttcgggtagatatctgtgaccaccttttagaattatct 362

                                                                       
Query: 181 aaaatactgaatgagttgattctgaattggttgtttttacttctgtcttacttaccagta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 aaaatactgaatgagttgattctgaattggttgtttttacttctgtcttacttaccagta 302

                                                                       
Query: 241 cacagcagattaaaaaggcatttttctctgaactgtgttcctttataatctttgaggttg 300
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 cacagccgattaaaaaggcatttttctctgaactgtgttcctttataatctttgaggttg 242

                                                    
Query: 301 ctattttattctgctgtctgttctgaaagacttcttagcct 341
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 ctattttattctgctgtctgttctgaaagacttcttagcct 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 359
Length of database: 759
Length adjustment: 9
Effective length of query: 350
Effective length of database: 750
Effective search space:   262500
Effective search space used:   262500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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