Query= MSMg01no062_d18.b1 MSMg01no062_d18.b1 CHROMAT_FILE:
MSMg01no062_d18.b1 PHD_FILE: MSMg01no062_d18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:05:36 2005
(715 letters)
>mm_chr4_94161594_94162707
Length = 1114
Score = 1201 bits (621), Expect = 0.0
Identities = 642/649 (98%), Gaps = 1/649 (0%)
Strand = Plus / Minus
Query: 67 tttgggtcacccaaacccatataaatactgtgtgtatgtgtgtgacacccgccatccagc 126
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 1114 tttgggtcacccaaacccatataaatactgtgtgtatgtgtgtgacatccgccatccagc 1055
Query: 127 acttggaagttggagacaattgaacacaagagcaagatggctatttagacggtgtacagg 186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1054 acttggaagttggagacaattgaacacaagagcaagatggctatttagacggtgtacagg 995
Query: 187 tgagctctgggttcaaattgagaggcctgcctcagtaacttagagaactacggaagaatt 246
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 994 tgagctctgggttcaaattgagaggcctgcctcagtaacttagagaactacggaagaatt 935
Query: 247 ccagtgttaacctccgcctcacatgtgaactcttttatacacactcataatatcacacac 306
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 934 ccagtgttaacctccgcctcacatgtgaactcaaatatacacactcataatatcacacac 875
Query: 307 atgctttaaaaaatagatactctgtgatataatgaatatgagggttaaggaacaaagcgt 366
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 874 atgctttaaaaaatagatactctgtgatgtaatgaatatgagggttaaggaacaaagcgt 815
Query: 367 tcagattctgcactgagcagctgtgtaatcttgtccaaatagccacaaatgagggaaata 426
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 814 tcacattctgcactgagcagctgtgtaatcttgtccaaatagccacaaatgagggaaata 755
Query: 427 gccatgtgtataatttcttacaactacaatagtctgtaattctaataaagtagaacctac 486
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 754 gccatgtgtataatttcttacaactacaatagtctgtaattctaataaagtagaacctac 695
Query: 487 aatttatgaaacagctcttaagttcaattgtttcttagctcctccaaagcagttgttatc 546
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 694 aatttatgaaacagctcttaagttcaattgtttcttagctcctccaaagcagttgttatc 635
Query: 547 ctttgtgtcttgctactcctcgatatgaactgcagtctagttgtgattttttttttcttt 606
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 634 ctttgtgtcttgctactcctcgatatgaactgcagtctagttgtga-tttttttttcttt 576
Query: 607 acccaattaacgtcttcactgtcagaatctcttagtatgcatactgatcataattattca 666
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 acccaattaacgtcttcactgtcagaatctcttagtatgcatactgatcataattattca 516
Query: 667 tgttcgatcataaacttagatgattttaacatactattttattgtaagt 715
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 tgttcgatcataaacttagatgattttaacatactattttattgtaagt 467
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 715
Length of database: 1114
Length adjustment: 10
Effective length of query: 705
Effective length of database: 1104
Effective search space: 778320
Effective search space used: 778320
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no062_d18.g1 MSMg01no062_d18.g1 CHROMAT_FILE:
MSMg01no062_d18.g1 PHD_FILE: MSMg01no062_d18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:05:37 2005
(681 letters)
>mm_chr4_94042310_94043390
Length = 1081
Score = 1210 bits (626), Expect = 0.0
Identities = 668/682 (97%), Gaps = 1/682 (0%)
Strand = Plus / Plus
Query: 1 taagctccctcttttcagaggaaaagcctagagggaagtggggaacgaattgtgtgagac 60
|||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||
Sbjct: 200 taagctccctcttttcagaggaaaaggggagagggaagtggggaaggaattgtgtgagac 259
Query: 61 ttggagggaagggagctgatactgtgatgtaacatgagtaattaaattaatggg-ggaaa 119
||||||||||||| || ||||||||||||||| ||||||||||||||||||||| |||||
Sbjct: 260 ttggagggaagggggccgatactgtgatgtaaaatgagtaattaaattaatgggtggaaa 319
Query: 120 aaagaaaaagaggccacaaatttgaaagagtaagaaggtctccttggagatgttggaggg 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 aaagaaaaagaggccacaaatttgaaagagtaagaaggtctccttggagatgttggaggg 379
Query: 180 ggaagagaatggggaaatgatgtattataattttaaaaattattgtgaagaaatttttaa 239
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 380 ggaagagaatggggaaatgatgcattataattttaaaaattattgtgaagaaatttttaa 439
Query: 240 ggaaatattttaaagctgtaaaaggggcaaaacttcaaatatatttagatcgattgaaag 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 ggaaatattttaaagctgtaaaaggggcaaaacttcaaatatatttagatcgattgaaag 499
Query: 300 catattttcctcttattacagctctcattgtctcatatagtgttacaattttctgaccag 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 catattttcctcttattacagctctcattgtctcatatagtgttacaattttctgaccag 559
Query: 360 agtataaaattcagtcgaattgagctcataggaagaatccggggcatgatctgggaagat 419
|||||||||||||||| || |||||||||||||||||||||||||||| |||||||||||
Sbjct: 560 agtataaaattcagtcaaactgagctcataggaagaatccggggcatggtctgggaagat 619
Query: 420 aaaagttccatttttgggccagcttttctagcaaacctcacacacaagcaaggttacagc 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 aaaagttccatttttgggccagcttttctagcaaacctcacacacaagcaaggttacagc 679
Query: 480 ttgcctgtaaattctcatcacaatctttacttttcttgcattgcacttatcacaactgtt 539
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 ttgcctgtaaattctcatcgcaatctttacttttcttgcattgcacttatcacaactgtt 739
Query: 540 ataaacatatttttgtttgctgtctgttcccttctttgttcacaatctgtctccaagatc 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 ataaacatatttttgtttgctgtctgttcccttctttgttcacaatctgtctccaagatc 799
Query: 600 taatatagcactatccataataggcttactgagttgttgtttttttttttaactagatga 659
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 800 taatatagcactatccataataggcttactgagttgttggttttttttttaactagatga 859
Query: 660 aattaaaatcacattctagttt 681
||||||||||||||||||||||
Sbjct: 860 aattaaaatcacattctagttt 881
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 40
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 681
Length of database: 1081
Length adjustment: 10
Effective length of query: 671
Effective length of database: 1071
Effective search space: 718641
Effective search space used: 718641
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
