BAC Information

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BAC

Clone NameMSMg01-062N11
Chromosome4 (Build37)
Map Location 103,614,604 - 103,689,516
singlet/doubletdoublet
Overlap genenone
Upstream geneSgip1, Tctex1d1, Insl5, Wdr78, Mier1, Slc35d1, 4921539E11Rik, 4930456L15Rik, Oma1, LOC665451, LOC100039940, EG665460, LOC622315
Downstream geneDab1, C8b, C8a, 1700024P16Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-062N11.T7 (MSMg01no062_n11.b1)MSMg01-062N11.TJ (MSMg01no062_n11.g1)
ACCAG288721AG288722
length1,2091,200
length of high quality
(start - end)		686 (128 - 813)746 (95 - 840)
definitionCHROMAT_FILE: MSMg01no062_n11.b1 PHD_FILE: MSMg01no062_n11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:06:51 2005CHROMAT_FILE: MSMg01no062_n11.g1 PHD_FILE: MSMg01no062_n11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:06:51 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(103,688,831 - 103,689,516)(103,614,604 - 103,615,349)
sequence
NCGGTATTTTNNNNNAGCAGTGGGCGCTAXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCATTATTATGAGAAATCCTTTTAAGACCCCTCATAAAA
TTTGCTCTTGCTTTTAGAGCCTTCTAAATCACTCATCCCTCCGAAAGCAA
AGGCTGCCAGGCTCTCCCTTGCATCCTGCTCTGTGTGCAGTTAGTGATGC
TCATCCAGATGTGTTATTTGATTTATTTCAACCCCATGTTTGCTGAATGC
TTCCATGGTGCCAGGGACCTTACTACTCACAAGCAACAAGCCTTTCACAT
CCACATGCCTGCGAGATGCCATGTCCCCTGAGAATTCTCTTCCTTATCTT
CCAAGACTGAGTTTTCCACTCATAGATAAACTCATTATCATCATCCTTCT
GTGCTTCTTTGTCTAATTTCTCTCTACTAAACACACAGATTACCTCGAAT
GTCATAGTTTATCACGTGGGGAAGACTCAGTGAATACAGAGAGGCAAGGC
ACATGCTAGATAGTAAGTAAATATTGGTTGTTGTGACAGCTGTACTTACC
ATTTAGAATTAGGGACCATATCTATTTTACCCAAGATGATGAATCAGGGT
AGAAAATGAGGATGAGGGCAGGGCTCAGCCCTGGGATGGATCAGTCAAAG
GAAGGGAGGGATGATTTGGATAACTGGTGTCATGGTCATTCCAAAAGGCA
GTTGTCGAAGGGGAGAGATATTTTAGAATAATCACTGTTAACTCTAGAAA
TATTCTCCTGACTGCTTGAGATGCCTAGTCCAAGCTCTTTAACCAGCTGC
CCCCAAATGATCAGACATCAAAATGCTCTCCCTCCATGACACCAGCCCCA
TCTCTTGTCCCTATTATCCAGGAGCTCTGGAAGGGATTTTCTGCTCTGCC
CTCCCAGGAGATGCTCCCTCAGGCTCTCTCTGCTCTGGCTGCCAGTGTTG
AAGGGACAAGTCCACACTTCTTGGCAGCAAAAAGGTTGAAGGCCCTTCGG
GCAAAACTTTGATGAATTGCTGTCTCTTCCGGTAGCCCCCCCTCTAGAAT
TAATGTATTTTAAGAGATTGGGGGTAAAATATAAAATTGTAACTCCCAAA
AAAAAACCGGTTTACCCCCTCCCTTCGGGATCCAACACTTTCTTTATTTC
TCCTAAACTCCTCATTTTGTGTTTTACACTCCGGTTCTCAAAAAATATAT
TTTCTTTTC

NCCGAGCTTTNTNNNNNACGATGTGATGCTGGGGXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCATTTAAGACCCACCTTAGAA
CCAAACACTGAGCATCTCCCTCTTGATTTCATCCCAGGCACCCATAATAA
TGGGAGGAAACTACAAAGCCCCACTCTCTTGAATACCATCAATAAGGTTC
ACTGAATCCCCCACAAGAGGGAGAAGACAGTTTTTGAAGCTCAAAGTGTT
AAGATAGATCTGTGCTTGGCCCTGTAGCTTTTGAGGCAGGAAGGGGTAGG
AGCATGTGTCCCCACCAGGTCATGGGGTAGGGACTGATTGTCATTTGCCT
AAAAAATCAGGAAGGATCTTCAGACATATTGTACTGGATAAAGTTCCGCA
TAGTGGCCTTGGAGGTCTGAAAAAGAGTAAGACTGGGGAAATGGGCGTCC
TGAAATGTCCTCCCAGGGAAAAATATATCCTAGAGGTAAAAGAAAATGGA
AGGAACTAGGCTAGGGGATTATGGAAAAGTAACTCAGGTGATCAGGACTG
AACATGGAGGAGGGAGAAGCCAGAGAATTCAGTGTGACTTGAGCTTGAAG
CTTAAAGCTTTTTATTCTTCATAACCCATCCTGAGAGTGTGTCATGGCTG
AATTTGTTGAGTCTGCACAATGCAGAAACTTGTCTTGTTATCCAGGCAGA
AATCTCTTCTTCCATACAATTGAGACTTCAGCATGCACTTGAGACTATTG
GATGCCACAGAGTCTGTAGACAAGATGTCCTACAGGCTCCCTGGGAAGGG
CTGGTGTTTGACTTCCTTATCTAAAGCAACCTGTTGAATTGCAAAGTCCT
CAGTTCCCCAGACCCTTTCCAGAAGAGTCATTTGGTGCACCATTTTTTAG
CCCATCTTTTATGTGCAGGAAGTTTTTTATTTAAAATATAATTCCGTTTT
ATTTTAATGTAATAATCTAAAGCCCTTTTTAAGGGCAACGGGTTCTTTTT
AAAAACTAGTTAATACAGGAACTTTCTTTATTTTAAACCGAATAATGGCT
GGTTGCCTTTGCTTAAAAAAAAAAACCTGAAACCCCAGGGACCTTTTTTC
TTCCTTTTATCCCAAATTTTCCTAACCCTACAAAACCCCTTGTAGGATAT
TAAAAAGAAACCGGGAACACCTTTGTGTTTAAAAACAACATTTCATTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no062_n11.b1 MSMg01no062_n11.b1 CHROMAT_FILE:
MSMg01no062_n11.b1 PHD_FILE: MSMg01no062_n11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:06:51 2005
         (686 letters)



>mm_chr4_103688631_103689716
          Length = 1086

 Score = 1326 bits (686), Expect = 0.0
 Identities = 686/686 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   atcactcatccctccgaaagcaaaggctgccaggctctcccttgcatcctgctctgtgtg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 886 atcactcatccctccgaaagcaaaggctgccaggctctcccttgcatcctgctctgtgtg 827

                                                                       
Query: 61  cagttagtgatgctcatccagatgtgttatttgatttatttcaaccccatgtttgctgaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 826 cagttagtgatgctcatccagatgtgttatttgatttatttcaaccccatgtttgctgaa 767

                                                                       
Query: 121 tgcttccatggtgccagggaccttactactcacaagcaacaagcctttcacatccacatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 766 tgcttccatggtgccagggaccttactactcacaagcaacaagcctttcacatccacatg 707

                                                                       
Query: 181 cctgcgagatgccatgtcccctgagaattctcttccttatcttccaagactgagttttcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 706 cctgcgagatgccatgtcccctgagaattctcttccttatcttccaagactgagttttcc 647

                                                                       
Query: 241 actcatagataaactcattatcatcatccttctgtgcttctttgtctaatttctctctac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 646 actcatagataaactcattatcatcatccttctgtgcttctttgtctaatttctctctac 587

                                                                       
Query: 301 taaacacacagattacctcgaatgtcatagtttatcacgtggggaagactcagtgaatac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 586 taaacacacagattacctcgaatgtcatagtttatcacgtggggaagactcagtgaatac 527

                                                                       
Query: 361 agagaggcaaggcacatgctagatagtaagtaaatattggttgttgtgacagctgtactt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 526 agagaggcaaggcacatgctagatagtaagtaaatattggttgttgtgacagctgtactt 467

                                                                       
Query: 421 accatttagaattagggaccatatctattttacccaagatgatgaatcagggtagaaaat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 466 accatttagaattagggaccatatctattttacccaagatgatgaatcagggtagaaaat 407

                                                                       
Query: 481 gaggatgagggcagggctcagccctgggatggatcagtcaaaggaagggagggatgattt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 gaggatgagggcagggctcagccctgggatggatcagtcaaaggaagggagggatgattt 347

                                                                       
Query: 541 ggataactggtgtcatggtcattccaaaaggcagttgtcgaaggggagagatattttaga 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 ggataactggtgtcatggtcattccaaaaggcagttgtcgaaggggagagatattttaga 287

                                                                       
Query: 601 ataatcactgttaactctagaaatattctcctgactgcttgagatgcctagtccaagctc 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 286 ataatcactgttaactctagaaatattctcctgactgcttgagatgcctagtccaagctc 227

                                     
Query: 661 tttaaccagctgcccccaaatgatca 686
           ||||||||||||||||||||||||||
Sbjct: 226 tttaaccagctgcccccaaatgatca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 686
Length of database: 1086
Length adjustment: 10
Effective length of query: 676
Effective length of database: 1076
Effective search space:   727376
Effective search space used:   727376
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no062_n11.g1 MSMg01no062_n11.g1 CHROMAT_FILE:
MSMg01no062_n11.g1 PHD_FILE: MSMg01no062_n11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:06:51 2005
         (746 letters)



>mm_chr4_103614404_103615549
          Length = 1146

 Score = 1388 bits (718), Expect = 0.0
 Identities = 739/746 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttagaaccaaacactgagcatctccctcttgatttcatcccaggcacccataataatggg 60
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 201 ttagaaccaaacactgagcatctccctcatgatttcatcccaggcacccataataatggg 260

                                                                       
Query: 61  aggaaactacaaagccccactctcttgaataccatcaataaggttcactgaatcccccac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aggaaactacaaagccccactctcttgaataccatcaataaggttcactgaatcccccac 320

                                                                       
Query: 121 aagagggagaagacagtttttgaagctcaaagtgttaagatagatctgtgcttggccctg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aagagggagaagacagtttttgaagctcaaagtgttaagatagatctgtgcttggccctg 380

                                                                       
Query: 181 tagcttttgaggcaggaaggggtaggagcatgtgtccccaccaggtcatggggtagggac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tagcttttgaggcaggaaggggtaggagcatgtgtccccaccaggtcatggggtagggac 440

                                                                       
Query: 241 tgattgtcatttgcctaaaaaatcaggaaggatcttcagacatattgtactggataaagt 300
           | ||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||
Sbjct: 441 taattgtcatttgcctaaaaaatcaggaaagatcttcagacacattgtactggataaagt 500

                                                                       
Query: 301 tccgcatagtggccttggaggtctgaaaaagagtaagactggggaaatgggcgtcctgaa 360
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tccgcatagtggccatggaggtctgaaaaagagtaagactggggaaatgggcgtcctgaa 560

                                                                       
Query: 361 atgtcctcccagggaaaaatatatcctagaggtaaaagaaaatggaaggaactaggctag 420
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 561 atgtcctcccagggaaaaatatatcctagaggtaaaagaaaatggaaggaactacgctag 620

                                                                       
Query: 421 gggattatggaaaagtaactcaggtgatcaggactgaacatggaggagggagaagccaga 480
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gggattatgaaaaagtaactcaggtgatcaggactgaacatggaggagggagaagccaga 680

                                                                       
Query: 481 gaattcagtgtgacttgagcttgaagcttaaagctttttattcttcataacccatcctga 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gaattcagtgtgacttgagcttgaagcttaaagctttttattcttcataacccatcctga 740

                                                                       
Query: 541 gagtgtgtcatggctgaatttgttgagtctgcacaatgcagaaacttgtcttgttatcca 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gagtgtgtcatggctgaatttgttgagtctgcacaatgcagaaacttgtcttgttatcca 800

                                                                       
Query: 601 ggcagaaatctcttcttccatacaattgagacttcagcatgcacttgagactattggatg 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 ggcagaaatctcttcttccatacaattgagacttcagcatgcacttgagactattggatg 860

                                                                       
Query: 661 ccacagagtctgtagacaagatgtcctacaggctccctgggaagggctggtgtttgactt 720
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 861 ccacagagtctgtagacaagatgtcctacaggctccctgggaagggctggtgtttgactt 920

                                     
Query: 721 ccttatctaaagcaacctgttgaatt 746
           ||||||||||||||||||||||||||
Sbjct: 921 ccttatctaaagcaacctgttgaatt 946


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 746
Length of database: 1146
Length adjustment: 10
Effective length of query: 736
Effective length of database: 1136
Effective search space:   836096
Effective search space used:   836096
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


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