Query= MSMg01no063_b05.b1 MSMg01no063_b05.b1 CHROMAT_FILE:
MSMg01no063_b05.b1 PHD_FILE: MSMg01no063_b05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:07:17 2005
(503 letters)
>mm_chr4_84919600_84920503
Length = 904
Score = 758 bits (392), Expect = 0.0
Identities = 484/548 (88%), Gaps = 56/548 (10%)
Strand = Plus / Plus
Query: 5 gaattctgtggtacactgaaggggttccaagtcctagtctctgtggagaaagcagtaagt 64
||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 164 gaattctgtgg-acactgaaggggttccaagtcctagtctctgtgcagaaagcagtaagt 222
Query: 65 gaaaactggagtatagcaagccaacaagtcagacaact---------------accacca 109
||||||||||||||||||||||||||||| ||||||| |||||||
Sbjct: 223 gaaaactggagtatagcaagccaacaagttggacaactaccaccaccaccaccaccacca 282
Query: 110 tc------------------------------accac---caccaccaccaccaccatca 136
|| ||||| ||||||||||||||||||||
Sbjct: 283 tcatcatcatcaagccaacaagtcagacaactaccaccatcaccaccaccaccaccatca 342
Query: 137 tcatcatcaagccaacaagtcagacaactaccaccatcatcaacatcatcaagccaacaa 196
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 343 tcatcatcaagccaacaagtcagacaactaccactatcatcaacatcatcaagccaacaa 402
Query: 197 gtcagataatcaccaccactaccaccaccaccaccatcatcaccatcaccaccaccacca 256
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 403 gtcagataatcaccaccactaccaccaccaccaccatcatcaccat------caccacca 456
Query: 257 ccaccaccaatacatagagggctcctgtttccaagcagctagaaagacaacaacaaggag 316
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 ccaccaccaatacatagagggctcctgtttccaagcagctagaaagacaacaacaaggag 516
Query: 317 taacccctgtgagctgtcgtccttcttctctgatggtgaaagtgggtatactttatgcag 376
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 taacccctgtgagctgtcggccttcttctctgatggtgaaagtgggtatactttatgcag 576
Query: 377 tatgtctactgcatgcttccattttccctccttgagaagggagggaaagtggtgtttggg 436
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 577 tatgtctactgcatgcttccatttttcctccttgagaagggagggaaagtggtgtttggg 636
Query: 437 aagtggtgttatgaatgaaaaaat-tgtccattcctataagataatgcaattccttgtat 495
||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct: 637 aagtggtgttatgaatgaaaaaaaatgtccattcctataagaaaatgcaattccttgtat 696
Query: 496 gctttagg 503
||||||||
Sbjct: 697 gctttagg 704
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 55
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 503
Length of database: 904
Length adjustment: 10
Effective length of query: 493
Effective length of database: 894
Effective search space: 440742
Effective search space used: 440742
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no063_b05.g1 MSMg01no063_b05.g1 CHROMAT_FILE:
MSMg01no063_b05.g1 PHD_FILE: MSMg01no063_b05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:07:17 2005
(284 letters)
>mm_chr4_85096970_85097653
Length = 684
Score = 503 bits (260), Expect = e-147
Identities = 278/284 (97%)
Strand = Plus / Minus
Query: 1 aataaataaatcagaataagagagatgaaaaattaaaaataaaactcactaaactgattt 60
|||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct: 484 aataaataaatcagaataagagagatgaaaaattaaaaataaaacttaataaactgattt 425
Query: 61 gtagttatccctggtgagatctagcctcatttcttctctaaatttcaagcagccaaaaat 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 gtagttatccctggtgagatctagcctcatttcttctctaaatttcaagcagccaaaaaa 365
Query: 121 ttttaaatatatacattaactattcaggaaaaaacaaacatcacttgtataagaaactgt 180
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 ttttaaatatatacattgactattcaggaaaaaacaaacatcacttgtataagaaactgt 305
Query: 181 cagtcttaacttttggtttttctgtagcatcatggatcagattttactttattttagtct 240
|||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct: 304 cagtcttaacttttggtttttctgtagcatcatgaatcagattctactttattttagtct 245
Query: 241 ttctttttcttgcagtggcagtagtagtggtggtggtggtagtg 284
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 ttctttttcttgcagtggcagtagtagtggtggtggtggtagtg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 284
Length of database: 684
Length adjustment: 9
Effective length of query: 275
Effective length of database: 675
Effective search space: 185625
Effective search space used: 185625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
