BAC Information

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BAC

Clone NameMSMg01-063D14
Chromosome4 (Build37)
Map Location 90,475,354 - 90,475,608
singlet/doubletsinglet
Overlap genenone
Upstream geneZfp352, LOC619842, LOC435792
Downstream genePpia-ps4_804.1, LOC664840, LOC664848, LOC100042274, Elavl2, LOC664864, LOC620016
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-063D14.T7 (MSMg01no063_d14.b1)MSMg01-063D14.TJ (MSMg01no063_d14.g1)
ACCAG289014AG289015
length882775
length of high quality
(start - end)
---253 (147 - 399)
definitionCHROMAT_FILE: MSMg01no063_d14.b1 PHD_FILE: MSMg01no063_d14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:07:30 2005CHROMAT_FILE: MSMg01no063_d14.g1 PHD_FILE: MSMg01no063_d14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:07:30 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCCCCTCCNNNNNCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNCCAAANNTNCCNCCCCTNACNACTCCCTTCCCNANANATCCCC
NNNATTCCCTNCTCCCCNCNNNTCCNANACCNNANNNNNANNACNNANNN
ANNNNNNANANNNATNGCCCCNNNNNNANNNANATTTCCTCCTTCCTTTT
TCCTTTCTTCCTCTCCTTTCTTCCCCCTCCCCTCCCCCCTCCTTTCCCCC
CCCCTTCCCTTCTCTCCCCCCCCCTCTTCTTCTCCCCTTTTTCCTTCTTT
TCTCTTCCTCCGGGGGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNGTTTTTTTTTCCCCCNCCCCCCCCNNCCCCCCTTTTT
TTTTTTTCCAANAAAANNNNNNNNNNNNNNNNNNNNNCNCNNNNNNNNNN
NNCCNTCCCCNNCNCCCCCCCCCCCCNCNNNNNCCNCNNCAACCNNNTTT
CCCNCCCCTTCCTCTTCTTTCCTCTTCTCTGTTCCCCCCCCCCCCNNNNN
NNNCTTTTTTTTTTTTTTTCTCTTCTTNNNNNNNNNNACCCTCTCCCCCC
CNNNNTNCTTCCCTTTTTTTCTCTCCCCCCTCTTTCCTATTTTCTTCTTT
TTTTTTATTTTTTACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNCCNNNNNCCCCCCCTTCTTTTT
NNNNNNNNNNNNNNNNNNNNNNNNCCCCTTTTTTTCCCNNNNNTTTCNNN
TTATCACTCTTTTTCGATGATAGTGTXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATGT
TGACTACAAATTAGGAAACTCACGTTTTTTTTTCCTTTTCTAGAGAGTTT
TTGATAACTAATCATTACATTTATGTCACTAGTTTTCTTTTGTCAGATTT
AAGAAGTTCCTTTATGTTATTGATTTGTTAATATGCTTAAATCACAAATA
AGTATGAAGTTTTATCTATAGCCTGTGACATTATCATCATTTTTCTGTAA
TGTAGCTAATTATACTGATTTTTGATGTGCTAACTCTTTTATATACTGAA
ATAAATAATATTCCTTGTAAAGTCTTGTGCATTCTCCCCCCCCACTCGTA
TGCCAATGCTAATATTTTAGTTTTTCATCTACCATTTAAAAAGATACTAT
ATGTATACTTATTTAATATATGTGTATGGCCTGCTATTTCTCCTTTTGAG
CCAAATGCTTTAATAACAAATCCATCATATTAGTGAAACAATTTTCTAAG
CTGTTCTTTCTATCATTCATTACCGTTTTCCTGTTGTCCACCTATCATAT
TACATTTTGGTTTCTCCTCATATCCCAACCTTGCTGACTGATAACTTGTC
ATGTCTTTCTTTAATAAGTCATGACTAGAAATGATGATCCAAATAGATTC
TCGAGGTATTCCCCTTTTCAATTAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no063_d14.g1 MSMg01no063_d14.g1 CHROMAT_FILE:
MSMg01no063_d14.g1 PHD_FILE: MSMg01no063_d14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:07:30 2005
         (253 letters)



>mm_chr4_90475154_90475808
          Length = 655

 Score =  474 bits (245), Expect = e-138
 Identities = 252/255 (98%), Gaps = 2/255 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   atgttgactacaaattaggaaactcacg--tttttttttccttttctagagagtttttga 58
           |||||||||||||||||||||||| |||  ||||||||||||||||||||||||||||||
Sbjct: 455 atgttgactacaaattaggaaacttacgtttttttttttccttttctagagagtttttga 396

                                                                       
Query: 59  taactaatcattacatttatgtcactagttttcttttgtcagatttaagaagttccttta 118
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 taactaatcattacatttatgtcactagttttcttttgtcagatttaagaagttccttta 336

                                                                       
Query: 119 tgttattgatttgttaatatgcttaaatcacaaataagtatgaagttttatctatagcct 178
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 tgttattgatttgttaatatgcttaaatcacaaataagtatgaagttttatctatagcct 276

                                                                       
Query: 179 gtgacattatcatcatttttctgtaatgtagctaattatactgatttttgatgtgctaac 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 gtgacattatcatcatttttctgtaatgtagctaattatactgatttttgatgtgctaac 216

                          
Query: 239 tcttttatatactga 253
           |||||||||||||||
Sbjct: 215 tcttttatatactga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 253
Length of database: 655
Length adjustment: 9
Effective length of query: 244
Effective length of database: 646
Effective search space:   157624
Effective search space used:   157624
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)