BAC Information

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BAC

Clone NameMSMg01-063I06
Chromosome4 (Build37)
Map Location 123,312,542 - 123,313,065
singlet/doubletsinglet
Overlap geneMacf1
Upstream geneLOC633279, 9530002B09Rik, Ppt1, Cap1, Mfsd2, Mycl1, Trit1, Bmp8b, Oxct2b, Ppie, Hpcal4, Nt5c1a, Heyl, LOC194197, LOC622334, Pabpc4, Bmp8a, Oxct2a, D830031N03Rik
Downstream geneLOC100039110, Ndufs5, 6330407G11Rik, Rhbdl2, LOC667064, Mycbp, Rragc, 1700057H15Rik, LOC100039332
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-063I06.T7 (MSMg01no063_i06.b1)MSMg01-063I06.TJ (MSMg01no063_i06.g1)
ACCAG289238AG289239
length759681
length of high quality
(start - end)
124 (188 - 311)524 (55 - 578)
definitionCHROMAT_FILE: MSMg01no063_i06.b1 PHD_FILE: MSMg01no063_i06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:07:54 2005CHROMAT_FILE: MSMg01no063_i06.g1 PHD_FILE: MSMg01no063_i06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:07:54 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCCCGNGC
NCCGCAAACANACCAATTATAATTGCGGCGCTAAACGACTACTATTTCCG
AGCCGCGGCGGAANNCCAANCTTTTCGAGACGAAGAGAANNNANNGNNAN
NNNANGNGCANGGGNGNNNNNNCCTGTTTGCCCGACATTGTAACAGCAGG
TCCCCTGGAACTGGAGGTACAGACAGGTGTGAGCTGCCATGTGGTTGCTG
GGGATTGAACCTGGGTCCTCTGGAAGAGCAGCCAGTGCTCTTTACCACTG
AGCCATCTCTCTTTTTCCGCAAATCTCTTCTTAATGGGCAGCAGGGACCA
CCTCCTATTATAGAAGGAAGCATGCTTTTTTTTTTTTTTTCCCCTGCCCT
AGCTACCTAGGGTATATTTTTTTTTTCCCCCCGCCCAGTCAACTGTATTT
GCTTAAATTTATAATGACAAAAACCACACAAAATAAAAAAACAAACGCAC
GTAACCCAATGTCTTACCATTCACCTCTGACTGGTCTGAAAGTTGCTATA
AAGACCAGCCTAGATTTGATCTCACAGAGATCTGACTACCTCTGCTCTGC
AAGCTTTGAGACTAAAGTCATGTATCACCATGCTTTGGAATGGCTTATTC
TTGTTTAACATTATTTTGTATTAGCCCGGCCTTTTTCCCTGATATTATTC
CATTTCTGACCGATTTTTTTTTTTTTATTTCTTTCGCTCTCTAAGACCCA
CGCCTTACT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXTTGCTAACCATGAACACAAAGATGAATGATATGCCATCCCAGCTCT
CAACACGCACAGACTCTTGCAGAGCACAAAAAAGTAAACAATTGTCATTC
AGTAGGATGGGTATCATCAAAAAGAAAGAATACAGGTTCTAGGGATACCA
GTTTTACCCAGAGAAAGGAACCTTTCAATCAAGGATCTCTGAAAATAGTC
TACCTTCCTCATTCCCAACTTAACACATCCAAATGATGCTGCCCACAGTT
CCATAGCTGTCAATTAGCACAGCATGTAAGAACAGGAACAGCTCCACAAG
GGAAGAAAACTCTTGAGTCAGCCTTCAGAGGAAGTTCCACAAGCCCACAC
CCAGAAAGCCTGACTTGAACAATCCCTATTGTCTGCCCCTCCCAGGGCCA
GAGACTGGACGTGTAGGAGGGTTTATTTGAAGAGAAAGGAGCAGACATTA
TAACCCACATTATTCCCAGGGACCAAACTTCTCTCCATGACAGTCTCAGT
AACTGTCATTTAGTTTTGTTCTTCCCACTAGGTTAAACAGCAGCTTAATC
ATGCAGAGGCCTCTAACGTTAAACAACATATTTTTTTTAACGTATTTTTT
AAAACAAAACCCATGGCTGGTGAAATGGCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no063_i06.g1 MSMg01no063_i06.g1 CHROMAT_FILE:
MSMg01no063_i06.g1 PHD_FILE: MSMg01no063_i06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:07:54 2005
         (524 letters)



>mm_chr4_123312342_123313265
          Length = 924

 Score =  992 bits (513), Expect = 0.0
 Identities = 522/525 (99%), Gaps = 2/525 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttgctaaccatgaacacaaagatgaatgatatgccatcccagctctcaacacgcacagac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttgctaaccatgaacacaaagatgaatgatatgccatcccagctctcaacacgcacagac 260

                                                                       
Query: 61  tcttgcagagcacaaaaaagtaaacaattgtcattcagtaggatgggtatcatcaaaaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcttgcagagcacaaaaaagtaaacaattgtcattcagtaggatgggtatcatcaaaaag 320

                                                                       
Query: 121 aaagaatacaggttctagggataccagttttacccagagaaaggaacctttcaatcaagg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaagaatacaggttctagggataccagttttacccagagaaaggaacctttcaatcaagg 380

                                                                       
Query: 181 atctctgaaaatagtctaccttcctcattcccaacttaacacatccaaatgatgctgccc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atctctgaaaatagtctaccttcctcattcccaacttaacacatccaaatgatgctgccc 440

                                                                       
Query: 241 acagttccatag-ctgtcaattagcacagcatgtaagaacaggaacagctccacaaggga 299
           ||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acagttcca-aggctgtcaattagcacagcatgtaagaacaggaacagctccacaaggga 499

                                                                       
Query: 300 agaaaactcttgagtcagccttcagaggaagttccacaagcccacacccagaaagcctga 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 agaaaactcttgagtcagccttcagaggaagttccacaagcccacacccagaaagcctga 559

                                                                       
Query: 360 cttgaacaatccctattgtctgcccctcccagggccagagactggacgtgtaggagggtt 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 cttgaacaatccctattgtctgcccctcccagggccagagactggacgtgtaggagggtt 619

                                                                       
Query: 420 tatttgaagagaaaggagcagacattataacccacattattcccagggaccaaacttctc 479
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 620 tatttgaagagaaaggagcagacattaaaacccacattattcccagggaccaaacttctc 679

                                                        
Query: 480 tccatgacagtctcagtaactgtcatttagttttgttcttcccac 524
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 tccatgacagtctcagtaactgtcatttagttttgttcttcccac 724


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 524
Length of database: 924
Length adjustment: 10
Effective length of query: 514
Effective length of database: 914
Effective search space:   469796
Effective search space used:   469796
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)