BAC Information

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BAC

Clone NameMSMg01-064A12
Chromosome4 (Build37)
Map Location 21,945,979 - 21,946,379
singlet/doubletsinglet
Overlap genenone
Upstream genePrdm13, Ccnc, 2610029I01Rik, Usp45, 4930528A17Rik, 5730406M06Rik, Coq3, 6230409E13Rik
Downstream geneLOC100040379, Fbxl4, Pou3f2, LOC664911, 1700025O08Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-064A12.T7 (MSMg01no064_a12.b1)MSMg01-064A12.TJ (MSMg01no064_a12.g1)
ACCAG289616AG289617
length1,2831,214
length of high quality
(start - end)
426 (28 - 453)381 (70 - 450)
definitionCHROMAT_FILE: MSMg01no064_a12.b1 PHD_FILE: MSMg01no064_a12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:08:38 2005CHROMAT_FILE: MSMg01no064_a12.g1 PHD_FILE: MSMg01no064_a12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:08:39 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNTTACACTGCGCGCTATAGACTCCTATAGGGAGAGGATCCGCGGAATTC
CATTTTCCTCCCTCTCAATACACACACACACACACACACACACACACACA
CACACACACACACACACACCTACCTCCCCCCCTAGGATGCTGACATGGGA
ATTTAAAAGCTCCCTAGATACTTGATCTATGCACCCATGTCAGACAGCCA
CTGTATTAACTTAGAAGATATTTGGTACTAAGTGCCATTCCAAGAACATA
GCAGTGTGACTAGGGGTCTATAGTCAGTGAGATCTGCATTCAAGGTCCTA
TTCCTCCTGTTGACAAGCTAAGTGACAACTGTTTAACAGCCCACAGCCTC
TATGTCTCCATTTGTATATCTGAAATAATGCCTAGTTTATAGGATTGTTT
GTTTATAATGAAATGTCAGCAAATCAACTAAGCACACATATCTAATACAT
ATTTTTTTGTCCCCCCCCATTTTATGTCCCTTAAGGCGTAAAAAAAAAGA
TTTTCCTGTAGAAGTACCTAATAAATATTCATTGGTTTGAATTTGGAGAC
TATAGAAGGACCCTCCCATGAGACAGAAGGGCATAGAGATGGGAAATGAA
AGGATGTCACAGAAGGGCCAAACTCATAATTCAACCTCAGCCTGTCTGTG
CCTTCCACGACCAGGACACAGTAGTGATGATATATACTCAGTCACAGGAC
AACATTCAACCCTACGACCAACAAGGAAAAGACTCTTCCAACATGATACC
CTCTTCAGCCTCCTAGGTAAGTAAATTGTCAACTGATTAGCATCTAATAA
TCTGGTAAGCAGTGTGTTATGAAAGATCTTTATAAACAACGGGTTGTTAA
AAAAAATAAATGTATTTTGTTCTTCCCCAAGCTTTGATAAATCCTTTTTT
TTTTCTGGTAAATATATCTTGACTCCCATATGTTAATCTTATCAATAATA
GAGCTTCTCCCTTTCATCTTTTTGGTTGGTAGAATACACTTCCTCCCTCT
TTTTTCTTCCCATCTTTTAGATTTTTATATTTAAAAATGTAGTATTTATT
ATTTTAAAACATTTTCCTTCCCTCTCCCTCTTATAATCTTTTTTTTCTTT
TTGTAATCATTTTATCCTTCTTTCTTTTTTTTAATATTTTCTTCTAATTT
ATCCTTATATTATCTCTCATATTATCTTCTTCTCTTTTTTGCTTCTTAAT
CTTTTCTCTATCTTGTTCCTATGCTATATTCTGATTTCGTATACTTTTTT
TATCATAATAACTTTTTACTTTTTCTCTATTTC
NNNGGGTGACGGTAGCTGGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCACACTTTCCTTGGTCAGGGGATACAGGGGG
GCAGCCAGTATTGCAAACCCAGGTATCCCCAGTCTGCAGAACCCAGCAGT
GCCCAAGAATTCTCTCACCTGTCTTGGAGTAGCCGGTGTTGGTATTTGAG
TCACAGTCCTTTTTCTAGCCTCTGTCAGCCACCATTTTTCATCCCAGAGG
TTATATCCCAAGTAGACTACTTCCATCTGACATAGCTGGGCTTTTTTAGC
AGAGGCCCGGTAACCCAACTCACCCAGTTCTGCTAGCAATCTCTTGGTCC
CCTGCCAGCATTCTCTCTCCGTGGTTGCAGCAAGGAGCAAGTCATCAACA
TATTGAAGCAGAGTTACCTGGGAGTTTTCAGCTCGGAAGGAGGCTAAATC
TTTTTGTTCCCCCTCCTCAAAAAGGGTGGGGGAGTTTTTAAAAAAAAGGA
GTAACCGTGTCCAGGTCAATTGTCCCGTTTGTCCAGTGTCAAGATCTCTC
CACTCAAAGGCCAATATGGGCTGGCTGGAGGGATGTAACTTCAGGCAAAA
GAAAGCATCTCTGAGAGGCACGGGGAATTCATGGTTTGATTTATGGCCGT
GAATTCTGAATGAGGTAATGTTGTTGATTCTGGTGGTTACCAAGTCCGTT
CTAAAATAAATGTTTTTTAACTTCTTATATAATAGTATATCAAAAGTTCC
CTTCTTGTGTTCTTTTTATACTTAAATTTTGTTTCTTCTTTAGTTCCAAA
TTTTTTCTTTTGGTTTTTTTTTATTTTTTTTTAAATGTTTTATGTTTTTT
TGATTTTATTTTTATATCTGGTTTTTCTAATTTTTATTTATTTTTGGTTT
TTTTCTTTTTTTTCTATTTTTCTTTTTCTATAATTTATTTTTTATTCTCT
TCTTTTTTTTATTATTAACTATTTATATATTTTTTCTTTCTTTTTTTTTT
CCTCTTTATTTTTTTTATTACTTTTTATTTTTATTTTTCATTTTTTTTTT
ATTTATTTTATATTTTATTCATTTCTCTAATTTTTATTTTCATTTTTAAA
TCTATTATTATTATTTTCATTCTTTTAATTTTTCATTTTTATTTTTTTTT
ATTTTTATTTTTTTTCTATCCTTTCTTAATTCTTATCTATTTTTTTCTTT
TCCTTATCTTTATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no064_a12.b1 MSMg01no064_a12.b1 CHROMAT_FILE:
MSMg01no064_a12.b1 PHD_FILE: MSMg01no064_a12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:08:38 2005
         (426 letters)



>mm_chr4_21945864_21946689
          Length = 826

 Score =  683 bits (353), Expect = 0.0
 Identities = 391/413 (94%), Gaps = 17/413 (4%)
 Strand = Plus / Minus

                                                                       
Query: 17  ggaattccattttcctccctctcaatacacacacacacacacacacacacacacacacac 76
           |||||||||||||||||||||||||       | ||||||||||||||||||||||| ||
Sbjct: 516 ggaattccattttcctccctctcaa-------atacacacacacacacacacacacatac 464

                                                                       
Query: 77  acacacacacacacacctacctcccccc-----ctaggatgctgacatgggaatttaaaa 131
           ||||||||||||||||||||||     |     |||||||||||||||||||||||||||
Sbjct: 463 acacacacacacacacctacct-----cgttggctaggatgctgacatgggaatttaaaa 409

                                                                       
Query: 132 gctccctagatacttgatctatgcacccatgtcagacagccactgtattaacttagaaga 191
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 gctccctagatacttgatctatgcacccatgtcagacagccactgtattaacttagaaga 349

                                                                       
Query: 192 tatttggtactaagtgccattccaagaacatagcagtgtgactaggggtctatagtcagt 251
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 tatttggtactaagtgccattccaagaacatagcagtgtgactaggggtctatagtcagt 289

                                                                       
Query: 252 gagatctgcattcaaggtcctattcctcctgttgacaagctaagtgacaactgtttaaca 311
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 288 gagatctgcattcaaggtcctattcctcctgttgacaagctaagtgacaactgtttaaca 229

                                                                       
Query: 312 gcccacagcctctatgtctccatttgtatatctgaaataatgcctagtttataggattgt 371
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 228 gcccacagcctctatgtctccatttgtatatctgaaataatgcctagtttataggattgt 169

                                                                
Query: 372 ttgtttataatgaaatgtcagcaaatcaactaagcacacatatctaatacata 424
           |||   |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 168 ttggggataatgaaatgtcagcaaatcaactaagcacacatatctaatacata 116


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 426
Length of database: 826
Length adjustment: 9
Effective length of query: 417
Effective length of database: 817
Effective search space:   340689
Effective search space used:   340689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)